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Lag0017941 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017941
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:12047824..12048189
RNA-Seq ExpressionLag0017941
SyntenyLag0017941
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-2860.83Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +S+   EE NQC  ST TR SAF+ LS+STSKK RPSTS FDRLK+INDQ +R++ +LKVK F E N+D K+HS +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.9e-2860Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK K F E N+D K+HS +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-2859.17Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   +E NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++  LK K F E N+D K+HS +P HMKRK S+ INT+GSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-2860Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST TR SAF+RLS+STSKK RPSTS FDR+K+INDQ +R++ +LK K F E N+D K+HS +P  MKRK  + INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-2859.17Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK K F E N+D K+H+ +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein8.2e-2960.83Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +S+   EE NQC  ST TR SAF+ LS+STSKK RPSTS FDRLK+INDQ +R++ +LKVK F E N+D K+HS +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
A0A5A7TQ06 Retrotransposon gag protein2.4e-2860Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK K F E N+D K+HS +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
A0A5A7UI09 Retrotransposon gag protein3.1e-2859.17Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK K F E N+D K+H+ +P  MKRK S+ INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
A0A5D3BLW3 Retrotransposon gag protein1.1e-2860Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST TR SAF+RLS+STSKK RPSTS FDR+K+INDQ +R++ +LK K F E N+D K+HS +P  MKRK  + INTEGSL VKP  
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
A0A5D3D5Q0 Gag protease polyprotein3.1e-2860.83Show/hide
Query:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL
        +SM   EE NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+ NDQ +R++ +LK K F E N+D K+HS +P  MKRK SI INT+GSL VKP L
Subjt:  MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNL

Query:  IILTSPINEGSDQDHDKDKS
        II T+PINEG ++  D++KS
Subjt:  IILTSPINEGSDQDHDKDKS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTAGCGATAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTC
AACATCTGTTTTTGATCGTCTCAAAGTAATAAACGATCAACCTAAAAGAAAGATAGACAACTTGAAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATA
GTAGCATCCCACCACATATGAAGAGGAAGTTTTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGA
TCTGATCAAGACCATGATAAAGATAAGAGCTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTAGCGATAGAAGAAGGAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCCACATCGAAGAAAAGTCGACCTTC
AACATCTGTTTTTGATCGTCTCAAAGTAATAAACGATCAACCTAAAAGAAAGATAGACAACTTGAAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCATA
GTAGCATCCCACCACATATGAAGAGGAAGTTTTCTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCTTGACCAGTCCTATAAATGAAGGA
TCTGATCAAGACCATGATAAAGATAAGAGCTTTTAA
Protein sequenceShow/hide protein sequence
MSMVAIEEGNQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVINDQPKRKIDNLKVKLFDEVNNDKKLHSSIPPHMKRKFSILINTEGSLKVKPNLIILTSPINEG
SDQDHDKDKSF