; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0017944 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017944
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:12116667..12120006
RNA-Seq ExpressionLag0017944
SyntenyLag0017944
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-2561.11Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC +ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M + + K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-2562.04Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]3.4e-2562.04Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-2561.68Show/hide
Query:  AATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIIL
        A  EEENQC  ST+TR SAF+RLS ST KK++PSTF FDR+K+T+ Q +R+M +L+ KLF E N D  + S +PSRMKRK S+ INTEGSL VKP  II 
Subjt:  AATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIIL

Query:  TNPTSQG
        TNPT++G
Subjt:  TNPTSQG

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]7.5e-2561.11Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INT+GSL VKP LII
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein3.6e-2561.11Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC +ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M + + K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

A0A5A7TQ06 Retrotransposon gag protein1.6e-2562.04Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

A0A5A7V935 Ty3-gypsy retrotransposon protein5.6e-2661.68Show/hide
Query:  AATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIIL
        A  EEENQC  ST+TR SAF+RLS ST KK++PSTF FDR+K+T+ Q +R+M +L+ KLF E N D  + S +PSRMKRK S+ INTEGSL VKP  II 
Subjt:  AATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIIL

Query:  TNPTSQG
        TNPT++G
Subjt:  TNPTSQG

A0A5D3BBF9 Gag protease polyprotein1.6e-2562.04Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK SV INTEGSL VKP  II
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

A0A5D3D5Q0 Gag protease polyprotein3.6e-2561.11Show/hide
Query:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII
        MA  EEENQC  ST+ R SAF+RLS ST KK +PST  FDRLK+T+DQ +R+M +L+ K F E N D K+ S +PSRMKRK S+ INT+GSL VKP LII
Subjt:  MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNPTSQG
         TNP ++G
Subjt:  LTNPTSQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTTTCTCCACACCGAAGAAAAGTCAACCTTCGACATT
TGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCA
TCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACTGATC
AAGACCATGATGAAGATAAGAGCTTTTAAAATGTTCTTACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTTGATGAAGTTCCTTCCTCCAA
GTTCGAAGGTTCTCATGTGTTTCGCTGCGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCATGTGTTTCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGCT
CTTTCTCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCAGAGTTCGAAGGTTCACGCACTTCGCTGTTGTTCCTTCCTCCAAGTTCGAAGGTTCTC
ACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCGTTCTTCCAA
GTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGTACTTC
GCTGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGTACTTCGCTGCAGTTCCTTCTCCCTACTGAGAGGAGGCCACCATTCATTCGGGGGGATTCAGAATCGGAGATTC
AGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAACCGATCATCCAAGAAGGTCAACAAGCCAACAGACCGATCATCAAGAAGATCAAGA
AGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATC
CAAAAGATCAACAAGCCGACAGGCTGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATC
CAAGAAGATCAACAAGCCATCAGGCCAATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCGGCAGGCCGATCATCCAAGAAGATCATC
AAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAACTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGAT
CCAAGAGATCATCAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTTTCTCCACACCGAAGAAAAGTCAACCTTCGACATT
TGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCA
TCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACTGATC
AAGACCATGATGAAGATAAGAGCTTTTAAAATGTTCTTACGCGCTTCGGTGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACACGCTTTGATGAAGTTCCTTCCTCCAA
GTTCGAAGGTTCTCATGTGTTTCGCTGCGCAGTTCCTTCCTCCAAGTTTGAAGGTTCTCATGTGTTTCGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGCT
CTTTCTCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAATTCCTTCCTCAGAGTTCGAAGGTTCACGCACTTCGCTGTTGTTCCTTCCTCCAAGTTCGAAGGTTCTC
ACGTGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTTTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCGTTCTTCCAA
GTTCAAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGTACTTC
GCTGCAGTTCCTTCTCCAAATTCGAAGGTTCTCACGTACTTCGCTGCAGTTCCTTCTCCCTACTGAGAGGAGGCCACCATTCATTCGGGGGGATTCAGAATCGGAGATTC
AGATCAGAGAACTCAGAGTCCAGAGAATTCTGCCAGAGTCCAGAGTCATCAGAAACCGATCATCCAAGAAGGTCAACAAGCCAACAGACCGATCATCAAGAAGATCAAGA
AGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATTCGACAGATCATCAAGCCAATCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATC
CAAAAGATCAACAAGCCGACAGGCTGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAGAAGATCAACAAGTCAGCAGACCGATCATC
CAAGAAGATCAACAAGCCATCAGGCCAATCATCCAAGAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCGGCAGGCCGATCATCCAAGAAGATCATC
AAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGCCGATCATCCAAGAACTCAACAAGCCAACAGGCCGATCATCCAAGAAGATCATCAAGCCAACAGGCCGAT
CCAAGAGATCATCAAACTAG
Protein sequenceShow/hide protein sequence
MAATEEENQCSVSTFTRPSAFQRLSFSTPKKSQPSTFVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGLI
KTMMKIRAFKMFLRASVKFLPPSSKVLTRFDEVPSSKFEGSHVFRCAVPSSKFEGSHVFRYVVPPPSAKDLMCSFSPNSKVLTRFAAIPSSEFEGSRTSLLFLPPSSKVL
TCFAAVPSSKFEGFHALRCSSFLQVRRFSAAAVRSSKFKGSHVASLQFLPPSSKVLTYFAAVPSPKFEGSHVLRCSSFSKFEGSHVLRCSSFSLLRGGHHSFGGIQNRRF
RSENSESREFCQSPESSETDHPRRSTSQQTDHQEDQEVSRPIIQEDQQANKPIRQIIKPIDRSRRSTSQQTDHPKDQQADRLIIQEDQQVSRPIIKPIIREDQQVSRPII
QEDQQAIRPIIQEDQQVTTGRSKRSLSRQADHPRRSSSQQADPRDHQPSKPIIQELNKPTGRSSKKIIKPTGRSKRSSN