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Lag0017945 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017945
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:12133772..12134778
RNA-Seq ExpressionLag0017945
SyntenyLag0017945
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]9.9e-0631.82Show/hide
Query:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV
        K+I   +SV+  E  +++EG+        + + + I  +++E D  SV+K+LN E  D T +SF++++I +L +SF   SF++  R +N+ AH L    V
Subjt:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV

Query:  SSPSSLISVL
        + PS    +L
Subjt:  SSPSSLISVL
MBA0852502.1 hypothetical protein [Gossypium schwendimanii]7.1e-0435.44Show/hide
Query:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
        + E   CL  I T  ++L+   I++E D ++++K L ++E+D++ +SFL+ EI     SF  + F Y PR  N+A H L
Subjt:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
XP_015384866.1 uncharacterized protein LOC107176592 [Citrus sinensis]4.2e-0431.78Show/hide
Query:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV
        K    S  VK  E +++  GL        + ++  +S +M+E+D   V K++NN+E   T+I +++ EI      F  ISF Y PRS N  AH L  + +
Subjt:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV

Query:  SSPSSLI
         S S+++
Subjt:  SSPSSLI
XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]1.4e-0431.25Show/hide
Query:  MGFKKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAH
        +G ++I ASW V+  E K+I  GL        +   L +  +++ESD + V++ L N+  DL+++S ++++I  L +SF ++ + Y  R  N+ AH
Subjt:  MGFKKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAH
XP_024047996.1 uncharacterized protein LOC112101553 [Citrus clementina]4.2e-0431.78Show/hide
Query:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV
        K    S  VK  E +++  GL        + ++  +S +M+E+D   V K++NN+E   T+I +++ EI      F  ISF Y PRS N  AH L  + +
Subjt:  KKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVV

Query:  SSPSSLI
         S S+++
Subjt:  SSPSSLI
TrEMBL top hitse value%identityAlignment
A0A7J8U6X7 RNase H domain-containing protein (Fragment)4.5e-0435.44Show/hide
Query:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
        + E   CL  + T  ++L+   I++E D ++V+K L  +E+D++ +SFL+ EI     SF  + F Y PR  N+A H L
Subjt:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
A0A7J9KS32 RNase H domain-containing protein7.6e-0439.73Show/hide
Query:  CLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
        CL ++ T  +++    IM+E D ++V+K LNN+E D + I  +++EI   AA F ++SF + PRS+N+ AH L
Subjt:  CLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
A0A7J9L178 RNase H domain-containing protein (Fragment)3.4e-0435.44Show/hide
Query:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
        + E   CL  I T  ++L+   I++E D ++++K L ++E+D++ +SFL+ EI     SF  + F Y PR  N+A H L
Subjt:  IHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTTCAAGAAGATCAATGCAAGTTGGTCCGTGAAGCAATTAGAGATGAAATCCATACATGAAGGTCTGAATTGTTTACCTTCCATTAGAACAATTAATCAAGATTT
GATCATTTCCCCTATCATGATCGAATCTGATGTCGTCAGTGTCGTGAAGATTCTAAACAATGAAGAGGAAGATTTGACGAAAATTTCTTTTCTTGTGGAAGAGATCCATC
GCCTGGCTGCTTCATTTGCAGATATCTCTTTTGATTACTGCCCTAGATCTTCAAACGAAGCTGCTCATCGCTTGGGGTGCATGGTAGTTTCCTCTCCCTCCTCCCTCATT
TCTGTTTTGGAATCCTCTTCCCCGATGGAAGAGGGTGTGGGTCAATGGATCAGCCACCTTTTTTTTCTTTCTTCTTCTCAAGTTGTTCGTTTGTTGGCCAACACCTCTAT
CTCCGACGCCCTTCTTCGACAACAACAAGGCAGCGGCGACAAGGCTTCAACACTGTTTTCGTGCAGTCCGACGATGCCTTCCTCCTCTCCAGAAAGTGGCATTCTCGACG
GTGGTAGCAACAGAGGTTCGACGTGGAGCCGTCCTTCTCGCGCAGCTGTCGTGTGGGAGGTTTTTCCGATGAGTTCCAAGGTGTTCAGGGGGCTGATTCACGATTTTTCC
GGCGAGCATTCAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGCTTCAAGAAGATCAATGCAAGTTGGTCCGTGAAGCAATTAGAGATGAAATCCATACATGAAGGTCTGAATTGTTTACCTTCCATTAGAACAATTAATCAAGATTT
GATCATTTCCCCTATCATGATCGAATCTGATGTCGTCAGTGTCGTGAAGATTCTAAACAATGAAGAGGAAGATTTGACGAAAATTTCTTTTCTTGTGGAAGAGATCCATC
GCCTGGCTGCTTCATTTGCAGATATCTCTTTTGATTACTGCCCTAGATCTTCAAACGAAGCTGCTCATCGCTTGGGGTGCATGGTAGTTTCCTCTCCCTCCTCCCTCATT
TCTGTTTTGGAATCCTCTTCCCCGATGGAAGAGGGTGTGGGTCAATGGATCAGCCACCTTTTTTTTCTTTCTTCTTCTCAAGTTGTTCGTTTGTTGGCCAACACCTCTAT
CTCCGACGCCCTTCTTCGACAACAACAAGGCAGCGGCGACAAGGCTTCAACACTGTTTTCGTGCAGTCCGACGATGCCTTCCTCCTCTCCAGAAAGTGGCATTCTCGACG
GTGGTAGCAACAGAGGTTCGACGTGGAGCCGTCCTTCTCGCGCAGCTGTCGTGTGGGAGGTTTTTCCGATGAGTTCCAAGGTGTTCAGGGGGCTGATTCACGATTTTTCC
GGCGAGCATTCAGATTAG
Protein sequenceShow/hide protein sequence
MGFKKINASWSVKQLEMKSIHEGLNCLPSIRTINQDLIISPIMIESDVVSVVKILNNEEEDLTKISFLVEEIHRLAASFADISFDYCPRSSNEAAHRLGCMVVSSPSSLI
SVLESSSPMEEGVGQWISHLFFLSSSQVVRLLANTSISDALLRQQQGSGDKASTLFSCSPTMPSSSPESGILDGGSNRGSTWSRPSRAAVVWEVFPMSSKVFRGLIHDFS
GEHSD