CuGenDBv2

Gene ID	Lag0017954
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr5:12260612..12261187
RNA-Seq Expression	Lag0017954
Synteny	Lag0017954
Gene Ontology terms	NA
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CCA66036.1 hypothetical protein [Beta vulgaris subsp. vulgaris]

4.4e-39

43.16

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M CV S  F VL+NG P   F   R LRQGDPLSP+LF +C+EGLSTLL   E + +I G++I +  + I+HLFFADDSL+F +A++EE   +  +L  Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        E  +G+K N++K     S+N+ PD +N +   L  K  +   +YLG+      +K  +F+ ++++VWK L+GWKG      G+EVLIK++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

MCH95088.1 hypothetical protein [Trifolium medium]

8.9e-40

45.79

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        MRCV +V F +L+NG P  +F  KR +RQGDPLSPYLF +C + LS ++   + +NLI+GI I N+   I+HLFFADDSLIF KA+KEE   +  VLE Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        ++V+G+K NLDK       N+   +  E   ++ I++ D+I +YLGM  Q  R+K  +FK + ++VW  L+GWK       G+ VLI S+
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

PNX55172.1 ribonuclease H [Trifolium pratense]

7.5e-39

42.63

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M+CV +V F +LING P +EF  +R LRQGDPLSPYLF +C++ LS L+ + + + LI G++I++    I+HLFFADDSLIF +ASK E   I ++++ Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        +  +G+  NL+K   + SK +  ++  EV  +L ++M D   +YLGM +   R+K  +F  ++EK+WK L+GWK       G+  LIK++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]

1.3e-46

52.13

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M CV+SV F VLING+P +EF   R LRQGDPLSPYLF +C+EGLS L+  EE +  I+ ++IN  C  I+HLF+ADD L+FFKAS      IK +LE Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQV-TGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLI
        E+  +G+  NLDK + ++SKN    MV  + Q L +   +S+GQYLG+  QT RNK  +F  ++++VWK LQGWKG LF +GG+EVL+
Subjt:  EQV-TGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLI

XP_030923330.1 uncharacterized protein LOC115950239 [Quercus lobata]

1.7e-38

42.63

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M CV +  F +L+NG P E  +  R +RQGDP+SPYLF +C+EGL+ LL + E   +I+G+ I      IT+L FADDSL+F +A++ EG  I ++L+IY
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        E+ +G+  NL+K     S N +     ++ ++LG+K  D   +YLG+     R K   F  L+++VWK LQGWKG L    GKE+LIK++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

TrEMBL top hits

e value

%identity

Alignment

A0A2K3JMB0 Ribonuclease H

3.6e-39

42.63

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M+CV +V F +LING P +EF  +R LRQGDPLSPYLF +C++ LS L+ + + + LI G++I++    I+HLFFADDSLIF +ASK E   I ++++ Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        +  +G+  NL+K   + SK +  ++  EV  +L ++M D   +YLGM +   R+K  +F  ++EK+WK L+GWK       G+  LIK++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

A0A392N7V7 Reverse transcriptase domain-containing protein (Fragment)

4.3e-40

45.79

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        MRCV +V F +L+NG P  +F  KR +RQGDPLSPYLF +C + LS ++   + +NLI+GI I N+   I+HLFFADDSLIF KA+KEE   +  VLE Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        ++V+G+K NLDK       N+   +  E   ++ I++ D+I +YLGM  Q  R+K  +FK + ++VW  L+GWK       G+ VLI S+
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

A0A6J1DUG8 uncharacterized protein LOC111024135

6.2e-47

52.13

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M CV+SV F VLING+P +EF   R LRQGDPLSPYLF +C+EGLS L+  EE +  I+ ++IN  C  I+HLF+ADD L+FFKAS      IK +LE Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQV-TGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLI
        E+  +G+  NLDK + ++SKN    MV  + Q L +   +S+GQYLG+  QT RNK  +F  ++++VWK LQGWKG LF +GG+EVL+
Subjt:  EQV-TGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLI

A0A803NI87 Uncharacterized protein

1.4e-38

43.16

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        MRC+ +  F   +NG        +R LRQGDPLSPYLF ICSEGLS LL+ EE    + G  ++     I+HLFFADDSLIF++A       IK+ L+IY
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
         + +G++ NLDK V   S N  P + N    +LG+ +++   +YLG+L  +ER+K  +F  ++E++WK++  W   LF +GGKEVL+K++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

F4NCI4 Reverse transcriptase domain-containing protein

2.1e-39

43.16

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Query:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY
        M CV S  F VL+NG P   F   R LRQGDPLSP+LF +C+EGLSTLL   E + +I G++I +  + I+HLFFADDSL+F +A++EE   +  +L  Y
Subjt:  MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIY

Query:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI
        E  +G+K N++K     S+N+ PD +N +   L  K  +   +YLG+      +K  +F+ ++++VWK L+GWKG      G+EVLIK++
Subjt:  EQVTGKKANLDKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSI

SwissProt top hits

e value

%identity

Alignment

P11369 LINE-1 retrotransposable element ORF2 protein

3.2e-08

28.57

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Query:  VLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIYEQVTGKKANL
        + +NG   E   LK   RQG PLSPYLF I  E L+  + +   Q  I GI+I      I+ L  ADD +++    K     +  ++  + +V G K N 
Subjt:  VLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIYEQVTGKKANL

Query:  DK-LVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIM---FKRLREKVWKVLQGWK
        +K +  + +KN   +   E+ +     +  +  +YLG+ + T+  K +    FK L++++ + L+ WK
Subjt:  DK-LVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIM---FKRLREKVWKVLQGWK

P92555 Uncharacterized mitochondrial protein AtMg01250

1.9e-13

52.94

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Query:  LINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDS
        +ING PQ      R LRQGDPLSPYLF +C+E LS L  R + Q  + GIR++N+   I HL FADD+
Subjt:  LINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDS

Arabidopsis top hits

e value

%identity

Alignment

ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)

1.4e-14

52.94

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Query:  LINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDS
        +ING PQ      R LRQGDPLSPYLF +C+E LS L  R + Q  + GIR++N+   I HL FADD+
Subjt:  LINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDS

Sequences

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CDS sequence

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ATGAGGTGTGTGAAGTCTGTATGCTTCCCAGTCCTTATAAATGGGATCCCTCAAGAAGAGTTCAGGCTTAAGAGAGAGCTAAGACAAGGAGACCCGCTCTCCCCATACTT
ATTCTTCATCTGTAGTGAAGGACTCTCAACGCTACTGGAAAGGGAAGAATTTCAAAATCTTATATCTGGTATCCGTATTAACAACCACTGCGCAAGCATAACCCATTTAT
TTTTTGCAGATGATAGCCTTATTTTCTTCAAAGCTTCAAAGGAGGAGGGATGCAGGATTAAGAAGGTCTTGGAGATCTACGAACAAGTTACAGGGAAAAAGGCAAACTTA
GATAAGTTGGTTTGTATGATGAGTAAGAACATGGCCCCTGATATGGTTAATGAGGTTGGCCAGCTTCTCGGAATCAAAATGGCCGACTCAATAGGGCAATACCTAGGAAT
GCTAGTGCAGACTGAAAGAAACAAGGGAATCATGTTTAAGAGGCTAAGAGAAAAGGTTTGGAAAGTTCTGCAGGGGTGGAAAGGGAACCTTTTCTTTCTAGGAGGGAAAG
AGGTTCTCATAAAGTCTATAACATAG

mRNA sequence

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Protein sequence

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MRCVKSVCFPVLINGIPQEEFRLKRELRQGDPLSPYLFFICSEGLSTLLEREEFQNLISGIRINNHCASITHLFFADDSLIFFKASKEEGCRIKKVLEIYEQVTGKKANL
DKLVCMMSKNMAPDMVNEVGQLLGIKMADSIGQYLGMLVQTERNKGIMFKRLREKVWKVLQGWKGNLFFLGGKEVLIKSIT

Lag0017954 (gene) of Sponge gourd (AG-4) v1 genome