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Lag0017956 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017956
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:12263354..12264836
RNA-Seq ExpressionLag0017956
SyntenyLag0017956
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046998.1 reverse transcriptase [Cucumis melo var. makuwa]1.2e-1142.19Show/hide
Query:  VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SK
        V  KQ+++T+ +    E +R         P   GT  K G M ++KWIP+SYEKLP+FCY CGR+GHVV EC E G +  +   FGV LR++      SK
Subjt:  VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SK

Query:  GFYKSWRSDFKPVGGRGPRGRGRGFFWR
        G  +  RS F    GRG  G+G   F R
Subjt:  GFYKSWRSDFKPVGGRGPRGRGRGFFWR

KAE8772589.1 hypothetical protein D1007_55405 [Hordeum vulgare]1.9e-0946.15Show/hide
Query:  KMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELR
        K  G+ LRVKV++N  +PL RG+ V+      K W P +YE LPNFCY CG + HV  ECN + ++K+++  FG  LR
Subjt:  KMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELR

PON85093.1 Zinc knuckle CX2CX4HX4C [Trema orientale]6.7e-1035.14Show/hide
Query:  LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPR
        LRV+V+I+  +PL+ G  V+ GS     W+   YEK+P+FC+YCGR+GH V+ C EEG E   +  +  +   LR ++ +K F K   +  K  G +G R
Subjt:  LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPR

Query:  GRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNR
          G G     A ++I   E   EK       S  R  SN+    ED++
Subjt:  GRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNR

TXG48912.1 hypothetical protein EZV62_024787 [Acer yangbiense]6.7e-1028.92Show/hide
Query:  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKV-------SLKQQSLTLYEKMK-------
        +V  ++ KL EKL L  ED  V E+ DED  + + + E  +  K+L+ K +N + F  ++ ++W   G V++         ++ +  + E+++       
Subjt:  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKV-------SLKQQSLTLYEKMK-------

Query:  ------GETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE
              G+ L+VKV+I+  +PLKR   +K         + + YE+LP FCY CGR+GH   +C+++
Subjt:  ------GETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE

TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]1.9e-1230.26Show/hide
Query:  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINN
        +++  L E L + EED  V+E  + +IE+  KD +  +  K+LT K +N E F  ++ +IW   G V+     V +   S   +    G+ +RVKV I+ 
Subjt:  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINN

Query:  KEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRG
         + L+R   +K G   E   + + YE+LP FCY CGR+GH + EC +    K         +G  L+   G K +Y++    ++    RG    G
Subjt:  KEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRG

TrEMBL top hitse value%identityAlignment
A0A2P5EHV3 Zinc knuckle CX2CX4HX4C3.2e-1035.14Show/hide
Query:  LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPR
        LRV+V+I+  +PL+ G  V+ GS     W+   YEK+P+FC+YCGR+GH V+ C EEG E   +  +  +   LR ++ +K F K   +  K  G +G R
Subjt:  LRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLE---KNKEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPR

Query:  GRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNR
          G G     A ++I   E   EK       S  R  SN+    ED++
Subjt:  GRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNR

A0A5C7GX56 CCHC-type domain-containing protein3.2e-1028.92Show/hide
Query:  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKV-------SLKQQSLTLYEKMK-------
        +V  ++ KL EKL L  ED  V E+ DED  + + + E  +  K+L+ K +N + F  ++ ++W   G V++         ++ +  + E+++       
Subjt:  VVGEDMHKLLEKLKLE-EDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKV-------SLKQQSLTLYEKMK-------

Query:  ------GETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE
              G+ L+VKV+I+  +PLKR   +K         + + YE+LP FCY CGR+GH   +C+++
Subjt:  ------GETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEE

A0A5C7HCW1 CCHC-type domain-containing protein9.1e-1330.26Show/hide
Query:  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINN
        +++  L E L + EED  V+E  + +IE+  KD +  +  K+LT K +N E F  ++ +IW   G V+     V +   S   +    G+ +RVKV I+ 
Subjt:  EDMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVK-----VSLKQQSLTLYEKMKGETLRVKVRINN

Query:  KEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRG
         + L+R   +K G   E   + + YE+LP FCY CGR+GH + EC +    K         +G  L+   G K +Y++    ++    RG    G
Subjt:  KEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKN----KEISFGVELRETNGSKGFYKSWRSDFKPVGGRGPRGRG

A0A5C7ICF7 CCHC-type domain-containing protein9.4e-1030.46Show/hide
Query:  DMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKVSLKQQSLTLYEKMKGETLRVKVRINNKEPLKR
        D+  L E L L +ED+ V+E+ +E   +   D +  +  K+L+ K IN E F   + ++        + L  +S   +    G+ +RVKVRI+  + LKR
Subjt:  DMHKLLEKLKL-EEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRIMPKIWGIEGVVKVSLKQQSLTLYEKMKGETLRVKVRINNKEPLKR

Query:  GTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNGSKGFYKSWRSDFK
           +K G   E   + + YE+L  FCY CG++GH + EC +E   K            +    G Y SW S  K
Subjt:  GTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNGSKGFYKSWRSDFK

A0A5D3C0K2 Reverse transcriptase5.9e-1242.19Show/hide
Query:  VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SK
        V  KQ+++T+ +    E +R         P   GT  K G M ++KWIP+SYEKLP+FCY CGR+GHVV EC E G +  +   FGV LR++      SK
Subjt:  VSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNG----SK

Query:  GFYKSWRSDFKPVGGRGPRGRGRGFFWR
        G  +  RS F    GRG  G+G   F R
Subjt:  GFYKSWRSDFKPVGGRGPRGRGRGFFWR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGAAGGGAAACCTTCGGGACACCGAGCAAGCTTGCCAAAGAGGAGGATCACCAATAGAAGGAAAAGACAACTATCAGGAATGTTTGGGAAGACAAGGAAGCAC
ATGGGAGGGAACAAAAGAAAACGAGGAAACAACGTTGGAAGGAGAAGTAGTAGGTGAAGATATGCACAAGCTTCTGGAGAAACTAAAGCTGGAAGAAGACAAGAGAGTAG
TGGAAGTTGAAGATGAAGATATAGAGGAGGCTGACAAAGATTTTGAAAACGCGATTGCGTGCAAAATTCTTACAACCAAATTTATAAATGCAGAAGTTTTCTCGAGGATA
ATGCCGAAAATATGGGGAATAGAAGGAGTTGTGAAGGTCTCTTTGAAGCAGCAGAGTCTGACGCTTTATGAGAAAATGAAGGGAGAAACTTTAAGGGTCAAAGTGAGAAT
CAACAATAAAGAACCACTTAAGAGAGGAACAAATGTAAAAGCGGGGTCCATGACGGAAAAAAAGTGGATTCCCATATCGTATGAGAAACTTCCAAACTTTTGTTACTACT
GTGGAAGATTGGGTCATGTGGTGCACGAGTGTAACGAGGAAGGATTGGAAAAAAATAAAGAAATAAGCTTTGGGGTAGAATTAAGGGAGACAAACGGAAGTAAAGGATTT
TATAAAAGCTGGAGAAGCGACTTTAAACCAGTCGGAGGAAGAGGACCAAGAGGAAGAGGAAGGGGATTCTTCTGGAGAGGCGCGAGAGAAGATATCAATTTGAATGAAAG
TTATGAAGAGAAAAATGGAACTGCCGATACCCAAAGCAACATCAGGAAAGGAAGTAACAGTAAGTTGGAGGAAGAAGACAACCGCCATAAAATACAGGAAGTGGGGGAAG
ATGGCCGAAATAGAGAGGAAGTCAGAAAGGAAGGAGAAAGAGCGGTGGAGGTGTCAACTAGGATCGGTAGACCCAATCAATCAGTAATAGACGAAATAGGCAAAGGACAG
ATGTTAGGGTCAATAGCAGGAAAAGACAGATCAGGGGAAGGGAAAGAGCCGTTGGAGGAAGGCCTTGGAAGTATCAGTGATGTCGAAATGGGTCAAAGCTGTGGCCCAAG
ACTTGAAAGGCCAACCATCGACATCCCAAAGAACAAATTAGAGCAAGTTAAGGAAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACATGAAGGGAAACCTTCGGGACACCGAGCAAGCTTGCCAAAGAGGAGGATCACCAATAGAAGGAAAAGACAACTATCAGGAATGTTTGGGAAGACAAGGAAGCAC
ATGGGAGGGAACAAAAGAAAACGAGGAAACAACGTTGGAAGGAGAAGTAGTAGGTGAAGATATGCACAAGCTTCTGGAGAAACTAAAGCTGGAAGAAGACAAGAGAGTAG
TGGAAGTTGAAGATGAAGATATAGAGGAGGCTGACAAAGATTTTGAAAACGCGATTGCGTGCAAAATTCTTACAACCAAATTTATAAATGCAGAAGTTTTCTCGAGGATA
ATGCCGAAAATATGGGGAATAGAAGGAGTTGTGAAGGTCTCTTTGAAGCAGCAGAGTCTGACGCTTTATGAGAAAATGAAGGGAGAAACTTTAAGGGTCAAAGTGAGAAT
CAACAATAAAGAACCACTTAAGAGAGGAACAAATGTAAAAGCGGGGTCCATGACGGAAAAAAAGTGGATTCCCATATCGTATGAGAAACTTCCAAACTTTTGTTACTACT
GTGGAAGATTGGGTCATGTGGTGCACGAGTGTAACGAGGAAGGATTGGAAAAAAATAAAGAAATAAGCTTTGGGGTAGAATTAAGGGAGACAAACGGAAGTAAAGGATTT
TATAAAAGCTGGAGAAGCGACTTTAAACCAGTCGGAGGAAGAGGACCAAGAGGAAGAGGAAGGGGATTCTTCTGGAGAGGCGCGAGAGAAGATATCAATTTGAATGAAAG
TTATGAAGAGAAAAATGGAACTGCCGATACCCAAAGCAACATCAGGAAAGGAAGTAACAGTAAGTTGGAGGAAGAAGACAACCGCCATAAAATACAGGAAGTGGGGGAAG
ATGGCCGAAATAGAGAGGAAGTCAGAAAGGAAGGAGAAAGAGCGGTGGAGGTGTCAACTAGGATCGGTAGACCCAATCAATCAGTAATAGACGAAATAGGCAAAGGACAG
ATGTTAGGGTCAATAGCAGGAAAAGACAGATCAGGGGAAGGGAAAGAGCCGTTGGAGGAAGGCCTTGGAAGTATCAGTGATGTCGAAATGGGTCAAAGCTGTGGCCCAAG
ACTTGAAAGGCCAACCATCGACATCCCAAAGAACAAATTAGAGCAAGTTAAGGAAAGCTGA
Protein sequenceShow/hide protein sequence
MDMKGNLRDTEQACQRGGSPIEGKDNYQECLGRQGSTWEGTKENEETTLEGEVVGEDMHKLLEKLKLEEDKRVVEVEDEDIEEADKDFENAIACKILTTKFINAEVFSRI
MPKIWGIEGVVKVSLKQQSLTLYEKMKGETLRVKVRINNKEPLKRGTNVKAGSMTEKKWIPISYEKLPNFCYYCGRLGHVVHECNEEGLEKNKEISFGVELRETNGSKGF
YKSWRSDFKPVGGRGPRGRGRGFFWRGAREDINLNESYEEKNGTADTQSNIRKGSNSKLEEEDNRHKIQEVGEDGRNREEVRKEGERAVEVSTRIGRPNQSVIDEIGKGQ
MLGSIAGKDRSGEGKEPLEEGLGSISDVEMGQSCGPRLERPTIDIPKNKLEQVKES