CuGenDBv2

Gene ID	Lag0017978
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	RNA polymerase II elongation factor
Genome location	chr5:12464940..12465602
RNA-Seq Expression	Lag0017978
Synteny	Lag0017978
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-98

83.49

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Query:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL W SRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

8.0e-101

84.55

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL WFSRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ ++F  SKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

3.9e-100

83.64

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL WFSRNFI I
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ +VF ASKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

XP_023553388.1 uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]

1.3e-98

82.49

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Query:  ETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS
        ET+DS AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLR+GRRETK+ESLKQQIFQLCCYFFLFHALSLTLLFTSS
Subjt:  ETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSS

Query:  DPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITISL
        DPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL W SRNF+TI L
Subjt:  DPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITISL

Query:  VCFAGLVFGASKFILCG
        +CF+G+VFGASKFILCG
Subjt:  VCFAGLVFGASKFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

2.6e-99

84.55

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS  AHIVEIPV+Q++H   NQN MISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI
        SSDPN C+KWW PAVA+ ATSGVFVIVVQ+KLWLYWKA+GQLQ+E+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL WFSRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
         L+ F+ +VF ASKFILC F
Subjt:  SLVCFAGLVFGASKFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

3.9e-101

84.55

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MAETKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQKE+ ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL WFSRNFITI
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ ++F  SKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

1.9e-100

83.64

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT
        MA+TKDS AAHIVEIPV+Q   +NH QNLMISVIQ HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+T
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFT

Query:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI
        SSDP  C+KWW PAV + ATSGVFVIVVQ+KLW+YWKA GQLQ+E++ENRALTRC QELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL WFSRNFI I
Subjt:  SSDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITI

Query:  SLVCFAGLVFGASKFILCGF
        SL+ F+ +VF ASKFILCGF
Subjt:  SLVCFAGLVFGASKFILCGF

A0A2P6QLA8 Uncharacterized protein

9.9e-73

63.06

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNL-MISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF
        MAE KD +  H+VEIPVD++H Q  + ++ +IS IQ HPL +ISES GHLLLLKLW+R+E LFG RI RRET+++ ++++IFQLCC+F +FHA  LT+LF
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNL-MISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF

Query:  TS---SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRN
        TS   S+  +C+KWW P++   +TS VFV++VQV LW YWK  GQLQ+E+ ENRAL RC+QELRMKG+ F+LSKEPQSGKR+KSSSVEIKW P+ W S+N
Subjt:  TS---SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRN

Query:  FITISLVCFAGLVFGASKFILC
         ITI LVCFAGLVF ASK +LC
Subjt:  FITISLVCFAGLVFGASKFILC

A0A6J1EWB5 uncharacterized protein LOC111438709

9.8e-97

83.03

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Query:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS  AAH+VEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSN-AAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTRCVQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL   SRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

2.6e-97

83.49

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Query:  ETKDSNAA-HIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
        ETKDS AA HIVEIP +       NQN+MISVI+QHPLRQISESSGHLLLLKLWQR+EHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS
Subjt:  ETKDSNAA-HIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTS

Query:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS
        SDPN C KWW P VA+ ATSGVFVIVVQ+KLWLYWKA+ QLQ+E++ENRALTR VQELRMKGSCFNLSKEPQ G RMKSSSVEIKWGPL W SRNF+TI 
Subjt:  SDPNACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITIS

Query:  LVCFAGLVFGASKFILCG
        L+CF+G+VFGASKFILCG
Subjt:  LVCFAGLVFGASKFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

5.8e-25

34.55

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Query:  QHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWAPAVAVAATSGVFVIVV
        +HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  +FFLFH++SL LLF       +S+  +AC++ W P++    +S   +  V
Subjt:  QHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLF-------TSSDPNACRKWWAPAVAVAATSGVFVIVV

Query:  QVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPL-NWFSRNFITISLVCFAGLVFGASKFILC
        + K  +       L++E+ + + L +CV+EL+ KG  F+L KE  + +R KS  VE K  P+  W +R+F+T+     + LV    + ILC
Subjt:  QVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPL-NWFSRNFITISLVCFAGLVFGASKFILC

AT5G56120.1 unknown protein

1.6e-67

55.65

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Query:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMIS----------VIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLF
        MA TKDS   H+VEIPVD++H +   Q  +++          VIQQHPL +ISES GHLLLLKLWQR+E LF  R+  +E++LES+K++IFQLCC+F +F
Subjt:  MAETKDSNAAHIVEIPVDQDHHQNHNQNLMIS----------VIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLF

Query:  HALSLTLLFTSSDPN---------ACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSS
        H    TL+++SS  +          C+KWW P+    ATS V V +VQ KL+++WK    + +ERN+NR LTRCV ELRMKGS F+LSKEP SGKRMKSS
Subjt:  HALSLTLLFTSSDPN---------ACRKWWAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSS

Query:  SVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF
        SVEIKW P+ WFS+  ITI L+C AGL F  SKFILCGF
Subjt:  SVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF

Sequences

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CDS sequence

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ATGGCCGAAACCAAAGATTCCAATGCCGCCCACATCGTGGAAATCCCAGTAGACCAAGACCATCATCAAAATCACAACCAAAATCTTATGATCTCTGTGATCCAACAGCA
CCCACTGAGGCAAATTTCTGAAAGCTCCGGCCATCTACTGCTCCTGAAACTCTGGCAACGAGACGAGCATCTCTTCGGCCTCCGAATCGGCCGCCGAGAGACCAAATTGG
AGTCTCTGAAGCAACAGATCTTCCAACTCTGCTGCTACTTCTTCCTCTTCCACGCCCTCTCTCTCACCCTCCTCTTCACATCCTCCGATCCCAACGCCTGCCGAAAGTGG
TGGGCTCCAGCGGTGGCGGTGGCGGCGACGTCGGGGGTGTTCGTGATCGTGGTGCAGGTGAAGTTGTGGCTGTACTGGAAGGCAGCAGGGCAGTTGCAGAAGGAGAGGAA
TGAGAACAGAGCACTTACAAGATGTGTTCAAGAGCTGAGGATGAAAGGGTCTTGTTTTAATCTGTCTAAAGAGCCTCAGAGTGGGAAGAGGATGAAGAGCTCCAGTGTGG
AGATCAAATGGGGGCCTCTCAATTGGTTCTCAAGGAATTTTATTACCATTTCTCTTGTTTGCTTTGCAGGGCTTGTTTTTGGTGCTTCCAAGTTCATTCTTTGTGGGTTT
TGA

mRNA sequence

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Protein sequence

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MAETKDSNAAHIVEIPVDQDHHQNHNQNLMISVIQQHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNACRKW
WAPAVAVAATSGVFVIVVQVKLWLYWKAAGQLQKERNENRALTRCVQELRMKGSCFNLSKEPQSGKRMKSSSVEIKWGPLNWFSRNFITISLVCFAGLVFGASKFILCGF

Lag0017978 (gene) of Sponge gourd (AG-4) v1 genome