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Lag0017982 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0017982
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:12564252..12564668
RNA-Seq ExpressionLag0017982
SyntenyLag0017982
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022154103.1 uncharacterized protein LOC111021439 [Momordica charantia]6.9e-1843.41Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+RQI R+QNVNAD+LARLA  Y+T L R VPVE+L  P++  +E + +D+Q               G+ +    +W   L+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQ+RA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]3.4e-1744.19Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+ QI R+QNV+AD+LARLAA Y+T L R VPVE+L +P++  +E + +D Q               G+ +    S   PL+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQRRA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

XP_022156986.1 uncharacterized protein LOC111023816 [Momordica charantia]6.0e-1438.76Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M  YL+KA+ LLA+F+   +RQ+ RS+N NAD LARLA+AY T L R VPVE+L + +V   E++                     E      +WMDP+ 
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
         +L NG +P D ++A++L+R+A+HY++++
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]2.4e-1844.96Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+RQI  +QNVNAD LARLA AY+T L R VPVE+L  P++  +E + +D Q               G+ +    +W  PL+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQRRA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

XP_022159204.1 uncharacterized protein LOC111025623 [Momordica charantia]1.0e-1642.64Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ K+ L +F K E+RQI  +QNVNAD+LARLAAAY T L R + VE+L +P++  +E + +DEQ                       +WM  L+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LP +  E ++LQR+A+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H3.3e-1843.41Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+RQI R+QNVNAD+LARLA  Y+T L R VPVE+L  P++  +E + +D+Q               G+ +    +W   L+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQ+RA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

A0A6J1DVC6 Ribonuclease H3.7e-1744.19Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+ QI R+QNV+AD+LARLAA Y+T L R VPVE+L +P++  +E + +D Q               G+ +    S   PL+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQRRA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

A0A6J1DWM2 Ribonuclease H2.9e-1438.76Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M  YL+KA+ LLA+F+   +RQ+ RS+N NAD LARLA+AY T L R VPVE+L + +V   E++                     E      +WMDP+ 
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
         +L NG +P D ++A++L+R+A+HY++++
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

A0A6J1DZU0 Ribonuclease H1.1e-1844.96Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ +  L +F K E+RQI  +QNVNAD LARLA AY+T L R VPVE+L  P++  +E + +D Q               G+ +    +W  PL+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LPT++ EA++LQRRA+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

A0A6J1E1Q5 uncharacterized protein LOC1110256234.8e-1742.64Show/hide
Query:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV
        M +YLS+ K+ L +F K E+RQI  +QNVNAD+LARLAAAY T L R + VE+L +P++  +E + +DEQ                       +WM  L+
Subjt:  MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLV

Query:  KYLANGDLPTDRAEAKRLQRRASHYVLRD
        KYL +G LP +  E ++LQR+A+ YVL+D
Subjt:  KYLANGDLPTDRAEAKRLQRRASHYVLRD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAATATTTATCCAAAGCTAAAGAGTTATTGGCCAAGTTCAAAAAGTGTGAGGTTAGACAAATCCTGAGATCCCAAAATGTTAATGCTGATTCATTAGCTCGTTT
GGCAGCAGCTTACAAAACAAAATTGAATAGAATAGTTCCAGTTGAGGTTTTGTTCAAGCCAACAGTATGTGGAAAAGAGGTAGTAGTGGTAGATGAGCAAGTTTCCATGG
GAGGTCGAGCCAGGACAAAAGTCAAAACCTCTGTGGGCGAGGCCGACCATGAGGGGGGCTCGTGGATGGATCCATTGGTGAAATATCTGGCGAATGGGGATCTACCTACA
GACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCATCGCATTATGTGCTGAGAGATTTTTATAGAATGTTGAAGCAAAAGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGAATATTTATCCAAAGCTAAAGAGTTATTGGCCAAGTTCAAAAAGTGTGAGGTTAGACAAATCCTGAGATCCCAAAATGTTAATGCTGATTCATTAGCTCGTTT
GGCAGCAGCTTACAAAACAAAATTGAATAGAATAGTTCCAGTTGAGGTTTTGTTCAAGCCAACAGTATGTGGAAAAGAGGTAGTAGTGGTAGATGAGCAAGTTTCCATGG
GAGGTCGAGCCAGGACAAAAGTCAAAACCTCTGTGGGCGAGGCCGACCATGAGGGGGGCTCGTGGATGGATCCATTGGTGAAATATCTGGCGAATGGGGATCTACCTACA
GACAGAGCTGAAGCCAAGAGGTTACAGAGGCGAGCATCGCATTATGTGCTGAGAGATTTTTATAGAATGTTGAAGCAAAAGAAATGA
Protein sequenceShow/hide protein sequence
MVEYLSKAKELLAKFKKCEVRQILRSQNVNADSLARLAAAYKTKLNRIVPVEVLFKPTVCGKEVVVVDEQVSMGGRARTKVKTSVGEADHEGGSWMDPLVKYLANGDLPT
DRAEAKRLQRRASHYVLRDFYRMLKQKK