; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018016 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018016
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSuccinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Genome locationchr5:13568161..13571045
RNA-Seq ExpressionLag0018016
SyntenyLag0018016
Gene Ontology termsGO:0006099 - tricarboxylic acid cycle (biological process)
GO:0006104 - succinyl-CoA metabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005739 - mitochondrion (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0042709 - succinate-CoA ligase complex (cellular component)
GO:0000287 - magnesium ion binding (molecular function)
GO:0003677 - DNA binding (molecular function)
GO:0004775 - succinate-CoA ligase (ADP-forming) activity (molecular function)
GO:0004776 - succinate-CoA ligase (GDP-forming) activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR004333 - SBP domain
IPR005809 - Succinate--CoA synthetase, beta subunit
IPR013650 - ATP-grasp fold, succinyl-CoA synthetase-type
IPR013815 - ATP-grasp fold, subdomain 1
IPR036893 - SBP domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157524.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X1 [Momordica charantia]1.2e-3989.8Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QG+ELM+KYGINV KGV VSSVDEAKN V+T FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

XP_022157525.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial isoform X2 [Momordica charantia]1.2e-3989.8Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QG+ELM+KYGINV KGV VSSVDEAKN V+T FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

XP_022959857.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita moschata]4.8e-4191.84Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELMNKYGINV KG+ VSSVDEAKN VQT FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

XP_023005021.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Cucurbita maxima]4.8e-4191.84Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELMNKYGINV KG+ VSSVDEAKN VQT FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

XP_038876130.1 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial [Benincasa hispida]4.1e-4090.82Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELMNKYGINV KG+ VSSV+EAKN +QTVFPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

TrEMBL top hitse value%identityAlignment
A0A5D3DLZ9 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial4.9e-3988.78Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELM+KYGINV KG+ VSSVDE KN V+T FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

A0A6J1DTC6 Succinate-CoA ligase subunit beta5.8e-4089.8Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QG+ELM+KYGINV KGV VSSVDEAKN V+T FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

A0A6J1DWQ4 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial5.8e-4089.8Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QG+ELM+KYGINV KGV VSSVDEAKN V+T FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVEE+AGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

A0A6J1H5Q5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.3e-4191.84Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELMNKYGINV KG+ VSSVDEAKN VQT FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

A0A6J1KTS5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.3e-4191.84Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELMNKYGINV KG+ VSSVDEAKN VQT FPDAKELV+KSQILAGGRGLGTFKSGLK GVHIVKVDQVE+YAGKMLGQILVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

SwissProt top hitse value%identityAlignment
B2UMH5 Succinate--CoA ligase [ADP-forming] subunit beta1.1e-1948.54Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKVL
        Q  +L  ++G+   KG+  S+  EA    + +     + V+K+Q+ AGGRG GTFK+G K GVH+VK V++VEE AGKML Q+LVTKQTG  GK+VSK++
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVK-VDQVEEYAGKMLGQILVTKQTGPQGKVVSKVL

Query:  NPE
          E
Subjt:  NPE

O82662 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.2e-3677.55Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELM KYG+NV KGV  SS++E K  +Q VFP+  ELV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

Q55AI5 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial8.6e-1742.98Show/hide
Query:  SLFMSSRDFLSNCNDQGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIV-KVDQVEEYAGKMLGQILV
        S  +  + FL+    Q  ++M  YGIN   G V  + +EA+ + + +  + ++LV+K+Q+LAGGRG G F SGLK GV +    + V+++A KMLG  LV
Subjt:  SLFMSSRDFLSNCNDQGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIV-KVDQVEEYAGKMLGQILV

Query:  TKQTGPQGKVVSKV
        TKQTG  GKVV +V
Subjt:  TKQTGPQGKVVSKV

Q6K9N6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial4.6e-3472.45Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELM KYGINV +G    SV+E KN ++ VFP  KE+V+KSQILAGGRGLGTFKSGL+ GVHIVK ++ E  A KMLGQILVTKQTGPQGK+VSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

Q84LB6 Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial2.7e-3473.47Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELM+KYGINV KGV V+S+DE K  +Q VFP+  E+V+KSQ+LAGGRGLGTFK+G + GVHIVK DQ E+ A KMLGQILVTKQTG QGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

Arabidopsis top hitse value%identityAlignment
AT1G76580.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein5.7e-0857.14Show/hide
Query:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL-----FMSSRDFLSN
        RFH L E DE KRSCR+RL+GHNRRRRK QP+++      + +RD  SN
Subjt:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESL-----FMSSRDFLSN

AT2G20420.1 ATP citrate lyase (ACL) family protein1.6e-3777.55Show/hide
Query:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV
        QGAELM KYG+NV KGV  SS++E K  +Q VFP+  ELV+KSQILAGGRGLGTFKSGLK GVHIVK D+ EE AGKMLGQ+LVTKQTGPQGKVVSKV
Subjt:  QGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLKAGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKV

AT5G50570.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein2.3e-0956.14Show/hide
Query:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        RFH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

AT5G50570.2 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein2.3e-0956.14Show/hide
Query:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        RFH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG

AT5G50670.1 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein2.3e-0956.14Show/hide
Query:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG
        RFH+L E DE KRSCRKRL+GHNRRRRKPQPE +   +  F      QG++L+   G
Subjt:  RFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTGTAGGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTT
GTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAATGATCAGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATG
AAGCAAAAAACGTAGTCCAGACTGTTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAG
GCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAA
GGTTTTGAATCCTGAACTTGCCAAAGATCCATGGTCTAAAGAGGAGGATGAATTTGTTGAATTTGTTGGGTTGAATTTGTTGCATTCACTGAAGCTTTCTCATGGCAATA
TCTTGGCCATATGCAAAGCTGGTTCTGTTATAAGCATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTATTGTAGGTTCCATTCGCTTGGTGAGCTTGATGAGGTGAAGAGGAGCTGTAGAAAAAGGCTTAATGGGCACAATCGGCGTAGGAGGAAGCCTCAACCTGAATCCTT
GTTTATGAGTTCAAGGGATTTTCTCTCAAATTGCAATGATCAGGGGGCTGAGCTGATGAACAAATATGGGATCAATGTATCCAAGGGTGTTGTTGTTTCTTCTGTCGATG
AAGCAAAAAACGTAGTCCAGACTGTTTTTCCTGATGCGAAAGAGTTGGTCATTAAAAGTCAAATTTTAGCTGGTGGAAGAGGTTTGGGGACATTCAAAAGTGGCTTAAAG
GCTGGAGTTCACATTGTTAAGGTGGACCAGGTTGAAGAGTATGCTGGAAAGATGCTTGGGCAGATACTTGTCACTAAACAAACTGGTCCACAGGGCAAAGTTGTCAGCAA
GGTTTTGAATCCTGAACTTGCCAAAGATCCATGGTCTAAAGAGGAGGATGAATTTGTTGAATTTGTTGGGTTGAATTTGTTGCATTCACTGAAGCTTTCTCATGGCAATA
TCTTGGCCATATGCAAAGCTGGTTCTGTTATAAGCATATGA
Protein sequenceShow/hide protein sequence
MYCRFHSLGELDEVKRSCRKRLNGHNRRRRKPQPESLFMSSRDFLSNCNDQGAELMNKYGINVSKGVVVSSVDEAKNVVQTVFPDAKELVIKSQILAGGRGLGTFKSGLK
AGVHIVKVDQVEEYAGKMLGQILVTKQTGPQGKVVSKVLNPELAKDPWSKEEDEFVEFVGLNLLHSLKLSHGNILAICKAGSVISI