; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018019 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018019
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:13819085..13822271
RNA-Seq ExpressionLag0018019
SyntenyLag0018019
Gene Ontology termsNA
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_015384470.1 uncharacterized protein LOC107176464 [Citrus sinensis]9.3e-6673.72Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        N D+FAWSH DMPGI P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL AGFIRE  YP W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        +PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EPDQ+ T+FIT+RGLYCYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

XP_022156048.1 uncharacterized protein LOC111023016 [Momordica charantia]1.5e-7180.12Show/hide
Query:  NWNWANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKA
        N+  +NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA  V+ELLK GFIREVHYPQW+SNVVLVKK NGKWRMCIDFTDLNK 
Subjt:  NWNWANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKA

Query:  CPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        CPKD +PLP IDQLVDATAGHE LSFMDAYSGYNQI+MH PDQE T+F+TSRGLYCY VMP
Subjt:  CPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

XP_024035690.1 uncharacterized protein LOC112096473 [Citrus clementina]5.5e-6673.72Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        N D+FAWSH DMPGI P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL AGFIRE  YP+W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        +PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EPDQ+ T+FIT+RGLYCYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

XP_024045974.1 uncharacterized protein LOC112100756 [Citrus clementina]7.1e-6673.72Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        N D+FAWSH DMPGI P +  H+LNVD   +PVKQ+RRAFN ER + +  +VD LL AGFIRE  YP W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        +PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EPDQ+ T+FIT+RGLYCYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

XP_030958833.1 uncharacterized protein LOC115980751 [Quercus lobata]7.9e-6573.72Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        N D+FAWSHEDMPGI P V+ H+LNVD   KP++QRRR F  +R++ VA +V +LL AGFIREV+YP+WL+NVVLVKKANGKWRMC+DFTDLNKACPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        +PLP IDQLVD+TAGH++L+FMDA+SGYNQI+M E DQE T+FITS+GLYCYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

TrEMBL top hitse value%identityAlignment
A0A2N9F1Z6 Ribonuclease H9.1e-6775.64Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        NAD+FAWSHEDMPGI   VMVH+LNV+    P+KQ+RR F  ERN  V ++VD+LL AGFIREV+YP+WL+NVV+VKK NGKWRMC+DFTDLNKACPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        YPLP IDQLVD+TAGH++LSFMDA+SGYNQIRM E DQE T+FITSRGL+CYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

A0A2N9G5X2 Ribonuclease H9.1e-6775.64Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        NAD+FAWSHEDMPGI   VMVH+LNV+    P+KQ+RR F  ERN  V ++VD+LL AGFIREV+YP+WL+NVV+VKK NGKWRMC+DFTDLNKACPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        YPLP IDQLVD+TAGH++LSFMDA+SGYNQIRM E DQE T+FITSRGL+CYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

A0A2N9GAX2 Reverse transcriptase domain-containing protein9.1e-6775Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        NAD+FAWSHEDMPGI   VM+H+LNV+    P+KQ+RR F  ERN  V ++VD+LL AGFIREV+YP+WL+NVV+VKK NGKWRMC+DFTDLNKACPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        YPLP IDQLVD+TAGH++LSFMDA+SGYNQIRM E DQE T+FITSRGL+CYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

A0A2N9HTE9 Ribonuclease H9.1e-6775.64Show/hide
Query:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS
        NAD+FAWSHEDMPGI   VMVH+LNV+    P+KQ+RR F  ERN  V ++VD+LL AGFIREV+YP+WL+NVV+VKK NGKWRMC+DFTDLNKACPKDS
Subjt:  NADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDS

Query:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        YPLP IDQLVD+TAGH++LSFMDA+SGYNQIRM E DQE T+FITSRGL+CYKVMP
Subjt:  YPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

A0A6J1DPJ5 uncharacterized protein LOC1110230167.2e-7280.12Show/hide
Query:  NWNWANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKA
        N+  +NAD+FAWS EDMP ID GVMVH+LNVD   KPVKQ+RRAFN ERNE+VA  V+ELLK GFIREVHYPQW+SNVVLVKK NGKWRMCIDFTDLNK 
Subjt:  NWNWANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKA

Query:  CPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        CPKD +PLP IDQLVDATAGHE LSFMDAYSGYNQI+MH PDQE T+F+TSRGLYCY VMP
Subjt:  CPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein5.2e-1133.33Show/hide
Query:  EVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFIT
        + +  ++++ LK+G IRE         V+ V K  G  RM +D+  LNK    + YPLP+I+QL+    G  + + +D  S Y+ IR+ + D+   +F  
Subjt:  EVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFIT

Query:  SRGLYCYKVMP
         RG++ Y VMP
Subjt:  SRGLYCYKVMP

P10394 Retrovirus-related Pol polyprotein from transposon 4121.2e-1231.85Show/hide
Query:  RDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANG------KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSF
        +D +PV  +       + E + +QV +L+K   + E    Q+ S ++LV K +       KWR+ ID+  +NK    D +PLP ID ++D     +  S 
Subjt:  RDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANG------KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSF

Query:  MDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP
        +D  SG++QI + E  ++ TSF TS G Y +  +P
Subjt:  MDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMP

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.6e-1540.52Show/hide
Query:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEN
        +E+NE   ++ V +LL   FI     P   S VVLV K +G +R+C+D+  LNKA   D +PLP ID L+      ++ + +D +SGY+QI M   D+  
Subjt:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEN

Query:  TSFITSRGLYCYKVMP
        T+F+T  G Y Y VMP
Subjt:  TSFITSRGLYCYKVMP

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.6e-1540.52Show/hide
Query:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEN
        +E+NE   ++ V +LL   FI     P   S VVLV K +G +R+C+D+  LNKA   D +PLP ID L+      ++ + +D +SGY+QI M   D+  
Subjt:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEN

Query:  TSFITSRGLYCYKVMP
        T+F+T  G Y Y VMP
Subjt:  TSFITSRGLYCYKVMP

Q9UR07 Transposon Tf2-11 polyprotein5.2e-1133.33Show/hide
Query:  EVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFIT
        + +  ++++ LK+G IRE         V+ V K  G  RM +D+  LNK    + YPLP+I+QL+    G  + + +D  S Y+ IR+ + D+   +F  
Subjt:  EVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFIT

Query:  SRGLYCYKVMP
         RG++ Y VMP
Subjt:  SRGLYCYKVMP

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGTCGCGATTTCGCGAGGTGATTTTGGACCACACAGATGGACAAGGAGCTGATGAGGACAATCGGGCAGAGGTAGGACCAAAAGACCGACTCGGAGGAAGACCGGA
CCAATGGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGGCCGGGCCTGGTGACCTCTTTTCGGT
CCCTGATGCCACGAATCGCCCCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGGCAAACAGCTTCTCCTCGGTTTTCTAACTTAGGC
ATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGTTGGCGCCGTCTGTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGT
GGTGTTCTGTAGGATGAATCGGGTTCAGAAACTAGAAGAAAACCTCGGGTATGAGCAGAAAGCGCCGAACCAGACTGAGGTCGACCTCGGTATGGAAAAGGTCGACCCTA
ACCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCAGAATC
AGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCAGAGGCTGTTGCGAGGTTCCGCATGTCAGCGATGTTGCTGGACTTGACCCAAGGGGATAGCCCGCG
GAGGAACTGGAATTGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGGATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAACGTGGATAGGGATTTCA
AGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTTGTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCC
CAATGGTTGTCCAATGTAGTACTAGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACTTCACCGACCTGAATAAGGCGTGCCCAAAGGACAGCTATCCTTTGCC
CATGATCGACCAGTTGGTTGACGCAACAGCAGGGCACGAGATGCTGAGTTTTATGGATGCATATTCAGGGTACAACCAGATTAGAATGCACGAGCCCGATCAGGAAAATA
CTTCATTCATCACCAGCCGAGGGTTGTATTGCTATAAGGTCATGCCGTTGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGTCGCGATTTCGCGAGGTGATTTTGGACCACACAGATGGACAAGGAGCTGATGAGGACAATCGGGCAGAGGTAGGACCAAAAGACCGACTCGGAGGAAGACCGGA
CCAATGGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCGCGGGCCGGGCCTGGTGACCTCTTTTCGGT
CCCTGATGCCACGAATCGCCCCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTAGGAGGGCAAACAGCTTCTCCTCGGTTTTCTAACTTAGGC
ATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGTTGGCGCCGTCTGTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGT
GGTGTTCTGTAGGATGAATCGGGTTCAGAAACTAGAAGAAAACCTCGGGTATGAGCAGAAAGCGCCGAACCAGACTGAGGTCGACCTCGGTATGGAAAAGGTCGACCCTA
ACCCGAAGGCTGTTGCGAGCAGAAAGCGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCGAAGGCTGTTGCGAGCAGAAAGCGCAGAATC
AGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACCCCAGAGGCTGTTGCGAGGTTCCGCATGTCAGCGATGTTGCTGGACTTGACCCAAGGGGATAGCCCGCG
GAGGAACTGGAATTGGGCTAACGCGGATCTGTTTGCGTGGTCACACGAGGATATGCCAGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAACGTGGATAGGGATTTCA
AGCCAGTAAAGCAGAGGCGAAGGGCATTTAACTCGGAGAGGAATGAGGTTGTTGCCAGTCAAGTAGATGAGCTGCTTAAAGCAGGGTTCATCAGAGAAGTTCATTATCCC
CAATGGTTGTCCAATGTAGTACTAGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACTTCACCGACCTGAATAAGGCGTGCCCAAAGGACAGCTATCCTTTGCC
CATGATCGACCAGTTGGTTGACGCAACAGCAGGGCACGAGATGCTGAGTTTTATGGATGCATATTCAGGGTACAACCAGATTAGAATGCACGAGCCCGATCAGGAAAATA
CTTCATTCATCACCAGCCGAGGGTTGTATTGCTATAAGGTCATGCCGTTGGTTTGA
Protein sequenceShow/hide protein sequence
MLSRFREVILDHTDGQGADEDNRAEVGPKDRLGGRPDQWVGPKWPDPYGRPRQKAEADHSARLRGPGLVTSFRSLMPRIAPVSPGSSRNTTEFLKTLGGQTASPRFSNLG
IGGGVAYTTPVCSGFCWSCSWRRLWGRVLASSDRASVVFCRMNRVQKLEENLGYEQKAPNQTEVDLGMEKVDPNPKAVASRKRRIRLRSASVWKRPTLTPKAVASRKRRI
RLRSASVWKRPTLTPEAVARFRMSAMLLDLTQGDSPRRNWNWANADLFAWSHEDMPGIDPGVMVHQLNVDRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYP
QWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQENTSFITSRGLYCYKVMPLV