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Lag0018025 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018025
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTHO complex subunit 4D
Genome locationchr5:13959459..13962937
RNA-Seq ExpressionLag0018025
SyntenyLag0018025
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK01611.1 THO complex subunit 4D [Cucumis melo var. makuwa]3.5e-1875Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLTVAIETQAKI
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT    T + +
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLTVAIETQAKI

XP_004145851.1 THO complex subunit 4D [Cucumis sativus]3.5e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

XP_008457020.1 PREDICTED: THO complex subunit 4D [Cucumis melo]3.5e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

XP_022143379.1 THO complex subunit 4D-like [Momordica charantia]3.5e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIE+LGDNAEM VS RINVTG+NGRS RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

XP_038896761.1 THO complex subunit 4D-like [Benincasa hispida]1.2e-1885.71Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDG+P+KIEMLGDNAEM VS RINVTGVNGRS RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

TrEMBL top hitse value%identityAlignment
A0A0A0L717 RRM domain-containing protein1.7e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

A0A1S3C452 THO complex subunit 4D1.7e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

A0A5D3BPA9 THO complex subunit 4D1.7e-1875Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLTVAIETQAKI
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNAEM VS RINVTG NGR+ RT+VLT    T + +
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLTVAIETQAKI

A0A6J1CP51 THO complex subunit 4D-like1.7e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIE+LGDNAEM VS RINVTG+NGRS RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

A0A6J1J564 THO complex subunit 4D-like2.9e-1884.13Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT
        GS EVVYTRRSDAFA LK YNNVLLDGKP+KIEMLGDNA+  VS RINVTGVNGRS RT+VLT
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRS-RTIVLT

SwissProt top hitse value%identityAlignment
Q6NQ72 THO complex subunit 4D3.9e-1257.58Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVL
        G+ EVVY RRSDAF  LK YNNVLLDG+P+++E+LG N    A +S    +NVTG+NGR  RT+V+
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVL

Q8L719 THO complex subunit 4B1.6e-0558.97Show/hide
Query:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN
        +G+ EVV++RR DA A +K YNNV LDGK +KIE++G N
Subjt:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN

Q8L773 THO complex subunit 4A6.5e-0753.33Show/hide
Query:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVS
        +G+ EVVY+RR DA A +K YN+V LDGKP+KIE++G N + + +
Subjt:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVS

Q94EH8 THO complex subunit 4C1.8e-1259.02Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV
        GS EVVY RRSDA   ++ YNNVLLDG+P+K+E+LG N E + V+ R+NVTG+NGR +  V
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV

Arabidopsis top hitse value%identityAlignment
AT1G66260.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-1359.02Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV
        GS EVVY RRSDA   ++ YNNVLLDG+P+K+E+LG N E + V+ R+NVTG+NGR +  V
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV

AT1G66260.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.3e-1359.02Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV
        GS EVVY RRSDA   ++ YNNVLLDG+P+K+E+LG N E + V+ R+NVTG+NGR +  V
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMS-VSTRINVTGVNGRSRTIV

AT5G37720.1 ALWAYS EARLY 42.8e-1357.58Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVL
        G+ EVVY RRSDAF  LK YNNVLLDG+P+++E+LG N    A +S    +NVTG+NGR  RT+V+
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVL

AT5G37720.2 ALWAYS EARLY 41.6e-1357.35Show/hide
Query:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVLTV
        G+ EVVY RRSDAF  LK YNNVLLDG+P+++E+LG N    A +S    +NVTG+NGR  RT+V+ V
Subjt:  GSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDN----AEMSVSTRINVTGVNGR-SRTIVLTV

AT5G59950.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.6e-0853.33Show/hide
Query:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVS
        +G+ EVVY+RR DA A +K YN+V LDGKP+KIE++G N + + +
Subjt:  QGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAAGCTATGATTGTACAGGGCTCGACAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTACTCTGAAGTGCTATAACAATGTTTTACTGGATGGGAAGCC
AATAAAGATTGAAATGCTTGGTGATAATGCTGAAATGTCAGTTTCTACACGTATAAATGTTACTGGAGTGAATGGAAGAAGTAGGACAATTGTTCTAACAGTTGCCATCG
AAACTCAGGCTAAAATCGACTCAATAATTGATGAGAAAAGATGGTTGTTTAATGACTTGTCGACAGGCAAAGTACGTTCACATTTGGTGAGAAATGGGGATACAATAGAT
TTAACGGGAAATGGAGATGTTGTGAAGACAATTGTAAGCCTGCCAAAGTCAATGCTGATGCTCCGAAGTTGGTCATCAGCCTTCTCTCTTCTTACAAGGTTTGGAATTCA
TCTTGTTAAGCGTGAACGGTTGCAGATGATGAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAAGCTATGATTGTACAGGGCTCGACAGAGGTGGTATATACTCGTAGAAGTGATGCATTTGCTACTCTGAAGTGCTATAACAATGTTTTACTGGATGGGAAGCC
AATAAAGATTGAAATGCTTGGTGATAATGCTGAAATGTCAGTTTCTACACGTATAAATGTTACTGGAGTGAATGGAAGAAGTAGGACAATTGTTCTAACAGTTGCCATCG
AAACTCAGGCTAAAATCGACTCAATAATTGATGAGAAAAGATGGTTGTTTAATGACTTGTCGACAGGCAAAGTACGTTCACATTTGGTGAGAAATGGGGATACAATAGAT
TTAACGGGAAATGGAGATGTTGTGAAGACAATTGTAAGCCTGCCAAAGTCAATGCTGATGCTCCGAAGTTGGTCATCAGCCTTCTCTCTTCTTACAAGGTTTGGAATTCA
TCTTGTTAAGCGTGAACGGTTGCAGATGATGAAATGA
Protein sequenceShow/hide protein sequence
MTEAMIVQGSTEVVYTRRSDAFATLKCYNNVLLDGKPIKIEMLGDNAEMSVSTRINVTGVNGRSRTIVLTVAIETQAKIDSIIDEKRWLFNDLSTGKVRSHLVRNGDTID
LTGNGDVVKTIVSLPKSMLMLRSWSSAFSLLTRFGIHLVKRERLQMMK