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Lag0018036 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018036
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description30S ribosomal protein S11, chloroplastic
Genome locationchr5:14370086..14370865
RNA-Seq ExpressionLag0018036
SyntenyLag0018036
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR001971 - Ribosomal protein S11
IPR036967 - Ribosomal protein S11 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AHM89651.1 ribosomal protein S11 [Lagenaria siceraria]6.1e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

YP_004841816.1 ribosomal protein S11 [Cucumis melo subsp. melo]6.1e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

YP_009751771.1 ribosomal protein S11 [Herpetospermum pedunculosum]6.1e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

YP_009752276.1 ribosomal protein S11 [Trichosanthes baviensis]7.9e-5390.55Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKG+IHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

YP_009753122.1 ribosomal protein S11 [Corallocarpus boehmii]6.1e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

TrEMBL top hitse value%identityAlignment
A0A1P8LFS2 Ribosomal protein S112.9e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

A0A1S4EU37 30S ribosomal protein S11, chloroplastic2.9e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

A0A249RZ89 30S ribosomal protein S11, chloroplastic2.9e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

A0A410HFC3 30S ribosomal protein S11, chloroplastic2.9e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

A0A6M3RVL4 30S ribosomal protein S11, chloroplastic2.9e-5391.34Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

SwissProt top hitse value%identityAlignment
A0ZZ68 30S ribosomal protein S11, chloroplastic9.8e-5487.4Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

Q0G9S9 30S ribosomal protein S11, chloroplastic3.7e-5386.61Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAK IPRIGSR+NGRI SRK+TRRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

Q0ZIY6 30S ribosomal protein S11, chloroplastic7.5e-5487.4Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRI SRKS RRIPKGVIHVQASFNNTIVTVTDVRGRV+SWSSAGTCGF+GTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

Q2L937 30S ribosomal protein S11, chloroplastic9.8e-5487.4Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIP++GSRRNGR S+RKS RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

Q4VZK2 30S ribosomal protein S11, chloroplastic2.3e-5590.55Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN

Arabidopsis top hitse value%identityAlignment
AT2G36160.1 Ribosomal protein S11 family protein1.7e-0535.11Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS
        GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RS
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS

AT3G11510.1 Ribosomal protein S11 family protein1.7e-0535.11Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS
        GV+H+ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RS
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS

AT3G52580.1 Ribosomal protein S11 family protein1.3e-0536.17Show/hide
Query:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS
        GV+HV ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + G+    V +        K PG G  +ALRA+ RS
Subjt:  GVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTR-RGTPFAAQTAAGNAIRAVVDQGMQRAEVMI--------KGPGLGRDAALRAIRRS

ATCG00750.1 ribosomal protein S112.1e-5184.25Show/hide
Query:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL
        MAKPI RIGSR+N R  SRK+ RRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGF+GTRRGTPFAAQTAAGNAIRAVVDQGMQRAEV IKGPGL
Subjt:  MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL

Query:  GRDAALRAIRRS-VLHMIDLPVSSMPN
        GRDAALRAIRRS +L      V+ MP+
Subjt:  GRDAALRAIRRS-VLHMIDLPVSSMPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAA
CAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGCACACCATTTGCCGCTCAAA
CCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGT
AGAAGTGTACTCCACATGATAGATCTGCCTGTATCCTCGATGCCGAATCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAACCCATACCAAGAATCGGTTCACGTAGAAATGGACGTATTAGCTCACGTAAAAGTACGCGTAGAATACCAAAGGGCGTTATTCATGTTCAAGCAAGTTTCAA
CAATACAATTGTGACTGTTACAGATGTACGGGGTCGGGTAATTTCTTGGTCCTCCGCCGGTACTTGTGGATTCAAAGGTACAAGAAGAGGCACACCATTTGCCGCTCAAA
CCGCAGCAGGAAATGCTATTCGGGCAGTAGTGGATCAGGGTATGCAACGAGCAGAAGTCATGATAAAGGGCCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGT
AGAAGTGTACTCCACATGATAGATCTGCCTGTATCCTCGATGCCGAATCGCTGA
Protein sequenceShow/hide protein sequence
MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIR
RSVLHMIDLPVSSMPNR