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Lag0018054 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018054
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr5:14860858..14861436
RNA-Seq ExpressionLag0018054
SyntenyLag0018054
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031665.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-2643.01Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E  +E S+ K    E+++EGW +V RRKK++ +  +KES  +++ +R  K+Q+ K KKK+R+ K V EE +DF  P   +TLA++F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPTSKA-LTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++V+E++ +   S E        S F++ DLLSLP E K++LI+AL+ S +S+   S A       CMSI FSDEDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPTSKA-LTCASCCMSIGFSDEDLLLGS

KAA0035662.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.0e-2743.81Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        MV+F +E   + SQ K  S ++++EGW +V  RKK++ +  QKESR +++ +R  K+Q+ K  KK+RR K V EE +DF  P   +TLA++FL RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNI--PTSKALTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++ +E++ +   S E      + S  ++ DLLSLP E K++LI+AL  S +S++  PTS      S CMSI FS+EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNI--PTSKALTCASCCMSIGFSDEDLLLGS

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]5.1e-2743.3Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +VRF +E   E SQ K    E+++EGWT+V RRKK++ +  QKE R +++ ++  K+Q+ K KKK+R+ K + EE +DF      +TLA++F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++ +E++++   S E      D S F++ DLLSLP E K +LI+AL+ S   SS+ PT+        CMSI FS EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS

KAA0046265.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.0e-2843.01Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E  +E S  K  S E++NEGW +V RR K++ +  QKES  +++ +R+ K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPT-SKALTCASCCMSIGFSDEDLLLGS
        Q E  EV+TCH ++  E++ + + S E      + S F++ DLLSLP E K++LI+AL+ S +S+  T + A      CMSI FS EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPT-SKALTCASCCMSIGFSDEDLLLGS

KAA0056780.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.0e-2743.81Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E   E  Q K  S E ++EGWT+V RRKK++ +  QKE R +++ +R  K+Q+ K KKK+++ K + EE +DF      +TLA +F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS
        Q E  EVV CH +D +E++ +   S E      D   F++ DLLSLP E K++LI+AL+ S   SS+ PT+        CMSI FSDEDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS

TrEMBL top hitse value%identityAlignment
A0A5A7SRA6 Ty3-gypsy retrotransposon protein5.5e-2743.01Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E  +E S+ K    E+++EGW +V RRKK++ +  +KES  +++ +R  K+Q+ K KKK+R+ K V EE +DF  P   +TLA++F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPTSKA-LTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++V+E++ +   S E        S F++ DLLSLP E K++LI+AL+ S +S+   S A       CMSI FSDEDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPTSKA-LTCASCCMSIGFSDEDLLLGS

A0A5A7SWL2 Ty3-gypsy retrotransposon protein1.4e-2743.81Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        MV+F +E   + SQ K  S ++++EGW +V  RKK++ +  QKESR +++ +R  K+Q+ K  KK+RR K V EE +DF  P   +TLA++FL RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNI--PTSKALTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++ +E++ +   S E      + S  ++ DLLSLP E K++LI+AL  S +S++  PTS      S CMSI FS+EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNI--PTSKALTCASCCMSIGFSDEDLLLGS

A0A5A7TY01 Ty3-gypsy retrotransposon protein2.9e-2843.01Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E  +E S  K  S E++NEGW +V RR K++ +  QKES  +++ +R+ K+Q+ K KKK+R+ K V EE +DF  P   +T+A+ F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPT-SKALTCASCCMSIGFSDEDLLLGS
        Q E  EV+TCH ++  E++ + + S E      + S F++ DLLSLP E K++LI+AL+ S +S+  T + A      CMSI FS EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPT-SKALTCASCCMSIGFSDEDLLLGS

A0A5D3BE72 Ty3-gypsy retrotransposon protein5.0e-2843.81Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +V+F +E   E  Q K  S E ++EGWT+V RRKK++ +  QKE R +++ +R  K+Q+ K KKK+++ K + EE +DF      +TLA +F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS
        Q E  EVV CH +D +E++ +   S E      D   F++ DLLSLP E K++LI+AL+ S   SS+ PT+        CMSI FSDEDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS

A0A5D3BSG5 Uncharacterized protein2.5e-2743.3Show/hide
Query:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS
        +VRF +E   E SQ K    E+++EGWT+V RRKK++ +  QKE R +++ ++  K+Q+ K KKK+R+ K + EE +DF      +TLA++F  RFL D 
Subjt:  MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDS

Query:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS
        Q E   VV CH ++ +E++++   S E      D S F++ DLLSLP E K +LI+AL+ S   SS+ PT+        CMSI FS EDLLLGS
Subjt:  QGEALEVVTCHIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIES--DSSNIPTSKALTCASCCMSIGFSDEDLLLGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCGATTCCGAAAAGAAGCCACAATGGAGGGGTCCCAAGGAAAATATAATTCCACTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAG
GCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCAAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGAAGGTCAAAGCCTGTCATGG
AGGAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCTAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGT
CACATTGTGGACGTGGTGGAAGATGATGATGTCCTTGCTAGTTCCTCGGAAATGGTGGCAAGTCCAGGAGACTCATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCC
TCATGAAGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGTTCAAACATCCCGACCTCTAAGGCACTCACATGCGCTTCATGTTGTATGTCTATAGGATTTT
CTGATGAAGATTTGTTGTTAGGGTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTTCGATTCCGAAAAGAAGCCACAATGGAGGGGTCCCAAGGAAAATATAATTCCACTGAAGATGAGAACGAAGGCTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAG
GCAAAGTTACGCACAGAAAGAGTCCCGCCTATTTCAAGATAGTAAAAGAAAGGTTAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCGAGAAGGTCAAAGCCTGTCATGG
AGGAAAGTGAAGATTTCTTTTGCCCTCCACCACCCATAACTTTGGCAGAATACTTCCTAAGGCGCTTTCTCGATGATAGTCAAGGAGAAGCACTTGAAGTCGTCACGTGT
CACATTGTGGACGTGGTGGAAGATGATGATGTCCTTGCTAGTTCCTCGGAAATGGTGGCAAGTCCAGGAGACTCATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCC
TCATGAAGCTAAAAGTGTCCTTATTGATGCGTTGATCGAGTCTGATAGTTCAAACATCCCGACCTCTAAGGCACTCACATGCGCTTCATGTTGTATGTCTATAGGATTTT
CTGATGAAGATTTGTTGTTAGGGTCATAG
Protein sequenceShow/hide protein sequence
MVRFRKEATMEGSQGKYNSTEDENEGWTLVVRRKKQRQSYAQKESRLFQDSKRKVKSQRKKGKKKSRRSKPVMEESEDFFCPPPPITLAEYFLRRFLDDSQGEALEVVTC
HIVDVVEDDDVLASSSEMVASPGDSSSFSIKDLLSLPHEAKSVLIDALIESDSSNIPTSKALTCASCCMSIGFSDEDLLLGS