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Lag0018064 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018064
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:15079879..15081428
RNA-Seq ExpressionLag0018064
SyntenyLag0018064
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]1.0e-1024.88Show/hide
Query:  KEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGK----------------------EIWNGAAKSIG-TFIKMEKDEGEG
        ++E   + E+ +D I   D+DV+   V  +LT K ++ E+F+ LI +IW   G+                      ++WN      G + I +EK +G G
Subjt:  KEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGK----------------------EIWNGAAKSIG-TFIKMEKDEGEG

Query:  RV-----------------------------------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKL
         +                                               WG+ +RVKV+++ +K L+R  R+K+G   E + + +  E+LPDFC+ CG++
Subjt:  RV-----------------------------------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKL

Query:  GHVMNECEEEDSE
        GH + EC +ED++
Subjt:  GHVMNECEEEDSE

TXG54824.1 hypothetical protein EZV62_020080 [Acer yangbiense]1.4e-1536.11Show/hide
Query:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTR
        EE G ++E  + +I    KDV+   V  +LT K ++ E+F+ LI +IW   G+       + IG  +++  D  E   WG+ +RVKV ++ SK+LRR  R
Subjt:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTR

Query:  LKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEE
        LK+G   E + + +  E+LP+FCY CG++GH + EC + D+ ++
Subjt:  LKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEE

TXG70052.1 hypothetical protein EZV62_004987 [Acer yangbiense]2.3e-1027.27Show/hide
Query:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKE---------IWNGAAKSIGTFIKMEKDEGEGRV-------------
        EE G ++EV ++     + DV+ + V  +L    ++ E+F+ LI+++W   GK          I    + S G  +K+E  + E  V             
Subjt:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKE---------IWNGAAKSIGTFIKMEKDEGEGRV-------------

Query:  ----------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEE
                              WG+ +RVKV+++ SK L+R  RLK+G   E   + +  E+LPDFC+ CG++GH++ EC +E++++
Subjt:  ----------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEE

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]6.1e-1144.32Show/hide
Query:  GAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC
        G   KE+     + +G F++++ +  E    G  LRVKVR+E  K LRRG  + VG  A+E W PIT E LPDFCY CG++GH    C
Subjt:  GAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.5e-0942.27Show/hide
Query:  GAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEEE
        G   KE+     + +G F++++  E +    G  LRVKVR+E  K LRRG  + VG  A+E W PIT E LPDFCY CG++GH    C  + + EE+
Subjt:  GAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEEE

TrEMBL top hitse value%identityAlignment
A0A5C7GU64 CCHC-type domain-containing protein5.1e-1124.88Show/hide
Query:  KEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGK----------------------EIWNGAAKSIG-TFIKMEKDEGEG
        ++E   + E+ +D I   D+DV+   V  +LT K ++ E+F+ LI +IW   G+                      ++WN      G + I +EK +G G
Subjt:  KEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGK----------------------EIWNGAAKSIG-TFIKMEKDEGEG

Query:  RV-----------------------------------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKL
         +                                               WG+ +RVKV+++ +K L+R  R+K+G   E + + +  E+LPDFC+ CG++
Subjt:  RV-----------------------------------------------WGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKL

Query:  GHVMNECEEEDSE
        GH + EC +ED++
Subjt:  GHVMNECEEEDSE

A0A5C7HCW1 CCHC-type domain-containing protein6.8e-1636.11Show/hide
Query:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTR
        EE G ++E  + +I    KDV+   V  +LT K ++ E+F+ LI +IW   G+       + IG  +++  D  E   WG+ +RVKV ++ SK+LRR  R
Subjt:  EEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASKALRRGTR

Query:  LKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEE
        LK+G   E + + +  E+LP+FCY CG++GH + EC + D+ ++
Subjt:  LKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEE

A0A5C7IWR3 CCHC-type domain-containing protein1.6e-0929.78Show/hide
Query:  MEEEKLLNKLGKMKLTKEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEML
        M   K+    G + L  +E G ++E+ +D       DVE   V  +L+ K ++ E+F+ LI      E +  W   A+ I   +++  +  E   WG+ +
Subjt:  MEEEKLLNKLGKMKLTKEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEML

Query:  RVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEEEDSEEEEEDQRRQGKANNIAVGQQHSVAPKSQ----ESR
        RVKVRL+ SK L+R  RLK+G   E + + +  ++LPDFCY CG++GH M EC     +EE  S   E    + G     +  ++ S    +Q     SR
Subjt:  RVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEEEDSEEEEEDQRRQGKANNIAVGQQHSVAPKSQ----ESR

Query:  KDQIAQERKETAGDDQCNLDTNEKS
        +    +  +E  G D  N  +   S
Subjt:  KDQIAQERKETAGDDQCNLDTNEKS

A0A803NU77 Uncharacterized protein5.6e-1046.67Show/hide
Query:  IGTFIKMEKDE-GEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC
        IGTF+++ +D   EG  WG  LR++V ++ SK L RG  +    MA+E WI    E+LPDFCY+CG +GHV ++C
Subjt:  IGTFIKMEKDE-GEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC

A0A803PVI8 Uncharacterized protein9.6e-1045.33Show/hide
Query:  IGTFIKMEKDE-GEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC
        IGTF+++ +D   EG  WG  LR++V ++ SK L RG  +    MA+E W+    E+LPDFCY+CG +GHV ++C
Subjt:  IGTFIKMEKDE-GEGRVWGEMLRVKVRLEASKALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNEC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAAGAAAAACTCCTAAACAAATTAGGCAAAATGAAACTGACCAAGGAGGAAAAAGGGGGCCTTGTAGAGGTTGAAGATGATGATATACACATCACTGATAAGGA
TGTCGAAAACACAGCAGTTTGCAACATTCTGACCTACAAGAGTATCAGTGCAGAATCCTTCCAAAGATTAATTTCGAAAATATGGGGAGCAGAAGGAAAAGAAATATGGA
ATGGCGCTGCAAAATCCATTGGGACTTTTATCAAAATGGAGAAAGACGAAGGAGAAGGTAGAGTCTGGGGAGAAATGTTGAGAGTCAAAGTTAGATTGGAAGCAAGTAAA
GCGTTGCGAAGAGGAACAAGATTGAAAGTTGGATCAATGGCAGAAGAATCATGGATCCCAATAACGATTGAAAAACTCCCAGATTTCTGCTATCAGTGTGGCAAGCTAGG
ACATGTGATGAATGAGTGTGAAGAGGAAGACAGTGAGGAAGAGGAAGACAGTGAGGAAGAGGAGGAAGATCAGAGAAGGCAAGGGAAAGCTAACAATATAGCCGTAGGGC
AGCAACATTCGGTGGCTCCAAAGTCACAAGAATCAAGAAAGGACCAGATAGCCCAAGAAAGAAAGGAAACTGCAGGGGACGACCAATGCAACTTAGACACCAACGAGAAA
AGTCAAGAAAATCAGAACCAATCCAGCAACTACGGAAATCAAAGATCTACTAAAAAATGGAAAAGGCTGGCAAGAAATGAACCTATGCAACAAGATGAAATGGAAATTCT
GACCAGCCAAAATGAGAAGAAGCATAGGAGAGATGAACAAGTGGAAGGAGAAGGTTTGAAGAAACAGAAAATTGTTTACTCTGAGAGAATCGGAGGGATATCGGCGGAGG
CTGGAGACCAGCCCCACCGGACGTCATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGAAGAAAAACTCCTAAACAAATTAGGCAAAATGAAACTGACCAAGGAGGAAAAAGGGGGCCTTGTAGAGGTTGAAGATGATGATATACACATCACTGATAAGGA
TGTCGAAAACACAGCAGTTTGCAACATTCTGACCTACAAGAGTATCAGTGCAGAATCCTTCCAAAGATTAATTTCGAAAATATGGGGAGCAGAAGGAAAAGAAATATGGA
ATGGCGCTGCAAAATCCATTGGGACTTTTATCAAAATGGAGAAAGACGAAGGAGAAGGTAGAGTCTGGGGAGAAATGTTGAGAGTCAAAGTTAGATTGGAAGCAAGTAAA
GCGTTGCGAAGAGGAACAAGATTGAAAGTTGGATCAATGGCAGAAGAATCATGGATCCCAATAACGATTGAAAAACTCCCAGATTTCTGCTATCAGTGTGGCAAGCTAGG
ACATGTGATGAATGAGTGTGAAGAGGAAGACAGTGAGGAAGAGGAAGACAGTGAGGAAGAGGAGGAAGATCAGAGAAGGCAAGGGAAAGCTAACAATATAGCCGTAGGGC
AGCAACATTCGGTGGCTCCAAAGTCACAAGAATCAAGAAAGGACCAGATAGCCCAAGAAAGAAAGGAAACTGCAGGGGACGACCAATGCAACTTAGACACCAACGAGAAA
AGTCAAGAAAATCAGAACCAATCCAGCAACTACGGAAATCAAAGATCTACTAAAAAATGGAAAAGGCTGGCAAGAAATGAACCTATGCAACAAGATGAAATGGAAATTCT
GACCAGCCAAAATGAGAAGAAGCATAGGAGAGATGAACAAGTGGAAGGAGAAGGTTTGAAGAAACAGAAAATTGTTTACTCTGAGAGAATCGGAGGGATATCGGCGGAGG
CTGGAGACCAGCCCCACCGGACGTCATGA
Protein sequenceShow/hide protein sequence
MEEEKLLNKLGKMKLTKEEKGGLVEVEDDDIHITDKDVENTAVCNILTYKSISAESFQRLISKIWGAEGKEIWNGAAKSIGTFIKMEKDEGEGRVWGEMLRVKVRLEASK
ALRRGTRLKVGSMAEESWIPITIEKLPDFCYQCGKLGHVMNECEEEDSEEEEDSEEEEEDQRRQGKANNIAVGQQHSVAPKSQESRKDQIAQERKETAGDDQCNLDTNEK
SQENQNQSSNYGNQRSTKKWKRLARNEPMQQDEMEILTSQNEKKHRRDEQVEGEGLKKQKIVYSERIGGISAEAGDQPHRTS