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Lag0018077 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018077
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDof-type zinc finger DNA-binding family protein isoform 1
Genome locationchr5:15620477..15621681
RNA-Seq ExpressionLag0018077
SyntenyLag0018077
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY20732.1 Dof-type zinc finger DNA-binding family protein isoform 1 [Theobroma cacao]2.9e-0469.23Show/hide
Query:  ALEHSASATVSYSPNLLFFERISFRNFTYVGICSSASTN
        AL  S +ATVSYSP+L FF +ISF+NFTY GICS+AS N
Subjt:  ALEHSASATVSYSPNLLFFERISFRNFTYVGICSSASTN
KAA0056500.1 photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa]5.8e-0543.16Show/hide
Query:  GSVGDRSANCKVTVVGRASPIPKCLKTEYDIKLMLAPKSHRALPTSLPPISFLTSALEHSASATVSYSPNLLFFER---ISFRNFTYVGICSSAS
        G V D SANC  TVVG A PIP  LK + DIKL+LAP+ H A P S+P       ++EH     +S SP   FF R   +   N +   IC   S
Subjt:  GSVGDRSANCKVTVVGRASPIPKCLKTEYDIKLMLAPKSHRALPTSLPPISFLTSALEHSASATVSYSPNLLFFER---ISFRNFTYVGICSSAS
TrEMBL top hitse value%identityAlignment
A0A061FV52 Dof-type zinc finger DNA-binding family protein isoform 11.4e-0469.23Show/hide
Query:  ALEHSASATVSYSPNLLFFERISFRNFTYVGICSSASTN
        AL  S +ATVSYSP+L FF +ISF+NFTY GICS+AS N
Subjt:  ALEHSASATVSYSPNLLFFERISFRNFTYVGICSSASTN
A0A5D3DZH8 Photosystem II CP47 reaction center protein-like2.8e-0543.16Show/hide
Query:  GSVGDRSANCKVTVVGRASPIPKCLKTEYDIKLMLAPKSHRALPTSLPPISFLTSALEHSASATVSYSPNLLFFER---ISFRNFTYVGICSSAS
        G V D SANC  TVVG A PIP  LK + DIKL+LAP+ H A P S+P       ++EH     +S SP   FF R   +   N +   IC   S
Subjt:  GSVGDRSANCKVTVVGRASPIPKCLKTEYDIKLMLAPKSHRALPTSLPPISFLTSALEHSASATVSYSPNLLFFER---ISFRNFTYVGICSSAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATCTGTAGGTGATCGGTCTGCCAACTGTAAGGTCACAGTTGTTGGCCGTGCTTCACCTATCCCTAAGTGTTTAAAAACCGAATATGACATTAAGTTGATGCTTGC
TCCTAAGTCGCACAGAGCTCTGCCTACATCCCTGCCCCCGATCTCATTCTTGACTAGTGCACTGGAACATTCCGCGAGTGCAACCGTTTCGTATTCTCCCAACCTTCTCT
TTTTTGAAAGAATATCTTTTAGGAACTTCACATATGTAGGCATTTGTTCGAGTGCCTCCACTAATGGTATGTTGATGTGCAACTACTTCAAGACATCTAAAAACTTCTTG
AACTGTACATCTTGTGAGGCATGTTTGAACTCTGAGGGTACGGAGGAGGTGGTCTGTAATCTGGGTCTATCAAAATTGTTTGAGGTTTTGCGATCACATTCACCTGTTTT
TTCTCCAACTTTGATTTTTCTTCTTTTTCCACCAAGGCTTCAGGCTCCTTGGTCTTTTCTACTTTATCTTGTTTATTCTTTGAAATATCTGAGGTTGTTTCCCAAACTGA
TGGGTTTTGGAATTACTCGACCTGGCTTGTCCTCCCCTAGAAAAATTTTGATGTTGTCTCCATCCTTGGTTATGCAGGGTTTAGTGGGCAATTTTCAGCGATGTGTTCCT
CACCACATATCTCACAATAGAGAGAAGAACAACATTGGCAGGGGCTATATTGGCTTGATTGTTCATGGACATGCCCATCATCATGCTATGAATGGCCTTGATCTTGGCTT
GCATCGTAGAGTTAGCCTCTGTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGATCTGTAGGTGATCGGTCTGCCAACTGTAAGGTCACAGTTGTTGGCCGTGCTTCACCTATCCCTAAGTGTTTAAAAACCGAATATGACATTAAGTTGATGCTTGC
TCCTAAGTCGCACAGAGCTCTGCCTACATCCCTGCCCCCGATCTCATTCTTGACTAGTGCACTGGAACATTCCGCGAGTGCAACCGTTTCGTATTCTCCCAACCTTCTCT
TTTTTGAAAGAATATCTTTTAGGAACTTCACATATGTAGGCATTTGTTCGAGTGCCTCCACTAATGGTATGTTGATGTGCAACTACTTCAAGACATCTAAAAACTTCTTG
AACTGTACATCTTGTGAGGCATGTTTGAACTCTGAGGGTACGGAGGAGGTGGTCTGTAATCTGGGTCTATCAAAATTGTTTGAGGTTTTGCGATCACATTCACCTGTTTT
TTCTCCAACTTTGATTTTTCTTCTTTTTCCACCAAGGCTTCAGGCTCCTTGGTCTTTTCTACTTTATCTTGTTTATTCTTTGAAATATCTGAGGTTGTTTCCCAAACTGA
TGGGTTTTGGAATTACTCGACCTGGCTTGTCCTCCCCTAGAAAAATTTTGATGTTGTCTCCATCCTTGGTTATGCAGGGTTTAGTGGGCAATTTTCAGCGATGTGTTCCT
CACCACATATCTCACAATAGAGAGAAGAACAACATTGGCAGGGGCTATATTGGCTTGATTGTTCATGGACATGCCCATCATCATGCTATGAATGGCCTTGATCTTGGCTT
GCATCGTAGAGTTAGCCTCTGTTTCTAA
Protein sequenceShow/hide protein sequence
MGSVGDRSANCKVTVVGRASPIPKCLKTEYDIKLMLAPKSHRALPTSLPPISFLTSALEHSASATVSYSPNLLFFERISFRNFTYVGICSSASTNGMLMCNYFKTSKNFL
NCTSCEACLNSEGTEEVVCNLGLSKLFEVLRSHSPVFSPTLIFLLFPPRLQAPWSFLLYLVYSLKYLRLFPKLMGFGITRPGLSSPRKILMLSPSLVMQGLVGNFQRCVP
HHISHNREKNNIGRGYIGLIVHGHAHHHAMNGLDLGLHRRVSLCF