CuGenDBv2

Gene ID	Lag0018132
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ty3-gypsy retrotransposon protein
Genome location	chr5:17201012..17205357
RNA-Seq Expression	Lag0018132
Synteny	Lag0018132
Gene Ontology terms	GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0025450.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.8e-23

61.76

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Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHWELL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

3.1e-22

60.78

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Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

KAA0050183.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

5.3e-22

59.8

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Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW L++IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

KAA0065377.1 uncharacterized protein E6C27_scaffold17G00390 [Cucumis melo var. makuwa]

3.1e-22

60.78

Show/hide

Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

3.1e-22

60.78

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Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

1.5e-22

60.78

Show/hide

Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

A0A5A7U2P5 Ty3-gypsy retrotransposon protein

2.6e-22

59.8

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Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW L++IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

A0A5A7VE63 Uncharacterized protein

1.5e-22

60.78

Show/hide

Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

A0A5D3BIH8 Uncharacterized protein

1.5e-22

60.78

Show/hide

Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHW LL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

A0A5D3C0N7 Ty3-gypsy retrotransposon protein

2.3e-23

61.76

Show/hide

Query:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE
        +SLDCKDRL ELS +EMC  GMHWELL+IL+GIKPRTFEELATRAHDME +IA++ N DLL+P +RKE +  + T        +E+MVV+TT  K  SKE
Subjt:  MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEET-------IEESMVVNTTLPKSSSKE

Query:  KR
        K+
Subjt:  KR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGTCTAGATTGCAAAGATCGCCTCATTGAACTCTCTTTCATTGAGATGTGCATTCATGGCATGCACTGGGAACTCCTCCACATCCTTAAAGGTATAAAGCCTCGCAC
CTTTGAAGAACTAGCAACTCGCGCCCACGACATGGAGCAAAATATTGCTAGTCAGGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAATGACGAAG
AGACTATAGAAGAATCTATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCAAAGGAAAAGCGACAAAATAATCTGTGTTTGGGGCCTCCCCTCACTACGTATTTCTTC
AGCCGCCGGCCATCACCCACGAATCGTCGGAGTTCCGGTCGTCGCCGTCATCGAGCAACACTGTCGCATGAGTTGTTCCGTCGTGTAGCCATCGCGCCGCCCTCCCTCGC
ACGGATCTCTCTCTCTCTTTCGCAACTCTCTCTCTCTTGTTGGTCTCTCTCCCTCTCGCGTCGCGCCGCCCGTCCAGCCGCCGCCGTTGCAACAAGGTGTGTCGCCGCCG
CCGCTTCACCGTTGTTCGGTTCTGTGGTTTTAGGTTCGTTTCTTGTGGGATTTCGCCAAGAAGAGAAGAAACTCGTGATCTCGCGTCCTAGCAGCTCGAAGCCTCAGTTC
TGCGCAATTTCGCCTCTGTCCAACGGTGTTTTGGCTCCGTTTTGGATCGTTACGATGGCCCAAGAGGGGTTTCTGTTTGATGGTGGACCACAAACAGGTATGGAAGATGA
TCCAGACCTTGGTGGCGAGGAGGAGAACTATGAGGAGGATTCCTAG

mRNA sequence

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Protein sequence

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MSLDCKDRLIELSFIEMCIHGMHWELLHILKGIKPRTFEELATRAHDMEQNIASQENQDLLLPNMRKEGRNDEETIEESMVVNTTLPKSSSKEKRQNNLCLGPPLTTYFF
SRRPSPTNRRSSGRRRHRATLSHELFRRVAIAPPSLARISLSLSQLSLSCWSLSLSRRAARPAAAVATRCVAAAASPLFGSVVLGSFLVGFRQEEKKLVISRPSSSKPQF
CAISPLSNGVLAPFWIVTMAQEGFLFDGGPQTGMEDDPDLGGEEENYEEDS

Lag0018132 (gene) of Sponge gourd (AG-4) v1 genome