CuGenDBv2

Gene ID	Lag0018152
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA mismatch repair protein MSH5
Genome location	chr5:17506249..17507133
RNA-Seq Expression	Lag0018152
Synteny	Lag0018152
Gene Ontology terms	GO:0006298 - mismatch repair (biological process) GO:0005524 - ATP binding (molecular function) GO:0030983 - mismatched DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022932275.1 DNA mismatch repair protein MSH5 isoform X6 [Cucurbita moschata]

2.4e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

XP_023007696.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita maxima]

2.4e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

XP_023007699.1 DNA mismatch repair protein MSH5 isoform X2 [Cucurbita maxima]

2.4e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

XP_023007704.1 DNA mismatch repair protein MSH5 isoform X7 [Cucurbita maxima]

2.4e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

XP_023553301.1 DNA mismatch repair protein MSH5 isoform X1 [Cucurbita pepo subsp. pepo]

2.4e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F1R7 DNA mismatch repair protein MSH5 isoform X1

1.2e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

A0A6J1L1D5 DNA mismatch repair protein MSH5 isoform X1

1.2e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

A0A6J1L3Q2 DNA mismatch repair protein MSH5 isoform X3

1.2e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

A0A6J1L5R0 DNA mismatch repair protein MSH5 isoform X7

1.2e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

A0A6J1L8E4 DNA mismatch repair protein MSH5 isoform X6

1.2e-24

88.06

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVPDEVIKRAA VLDA+GNNKHVERLHNENLSA DKLYQDAVDKLLGLDVNKCDLS FF+ IFPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

SwissProt top hits

e value

%identity

Alignment

F4JEP5 DNA mismatch repair protein MSH5

2.2e-12

49.25

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVP+EV+KRAA VLDA  +N +V++L  + +S+ D+ ++DAVDK   LD++K D+  FF+DIF S
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

Q6L4V0 DNA mismatch repair protein MSH5

4.6e-10

47.76

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVP EV++RA +VL  I + + + R+  E L+A D+ YQDAV KLL  D +K DL  FF+++FPS
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

Arabidopsis top hits

e value

%identity

Alignment

AT3G20475.1 MUTS-homologue 5

1.6e-13

49.25

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Query:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS
        + GVP+EV+KRAA VLDA  +N +V++L  + +S+ D+ ++DAVDK   LD++K D+  FF+DIF S
Subjt:  MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPS

Sequences

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CDS sequence

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ATGCTTGGCGTTCCAGATGAGGTTATTAAGAGAGCAGCCTCTGTTTTGGATGCCATAGGGAATAATAAGCATGTTGAGCGGCTGCACAATGAGAATTTATCCGCTCATGA
TAAGCTATACCAGGATGCGGTCGACAAGTTGCTGGGGCTTGATGTTAACAAGTGTGATCTTAGCCTTTTCTTTCGGGACATATTTCCTTCGTATGGTTGGCACTTGGCAG
AAGGTTCCGTTCCCAGAGTCTGGTCATACAAACAGCACTGGAACGATTAG

mRNA sequence

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Protein sequence

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MLGVPDEVIKRAASVLDAIGNNKHVERLHNENLSAHDKLYQDAVDKLLGLDVNKCDLSLFFRDIFPSYGWHLAEGSVPRVWSYKQHWND

Lag0018152 (gene) of Sponge gourd (AG-4) v1 genome