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Lag0018166 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018166
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptiontransmembrane protein 50A
Genome locationchr5:17874344..17875626
RNA-Seq ExpressionLag0018166
SyntenyLag0018166
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067394.1 transmembrane protein 50A [Cucumis melo var. makuwa]1.4e-1388.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
KGN50994.1 hypothetical protein Csa_008144 [Cucumis sativus]1.4e-1388.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
XP_004140320.1 transmembrane protein 50A [Cucumis sativus]1.4e-1388.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]1.4e-1388.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]1.4e-1388.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
TrEMBL top hitse value%identityAlignment
A0A0A0KQ70 Uncharacterized protein6.8e-1488.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
A0A1S3CCJ8 transmembrane protein 50A6.8e-1488.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
A0A5D3DT37 Transmembrane protein 50A6.8e-1488.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
A0A6J1FCW9 transmembrane protein 50A-like8.9e-1476.92Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG    + +L
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL
A0A6J1JRP9 transmembrane protein 50A6.8e-1488.64Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
        DL ELWSIFGPGVA AVF  GWWFWVDAVVCSSV VSFVHYLPG
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein2.1e-1569.23Show/hide
Query:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL
        DL ELW+IFGPG + AVF  GWWFWVDAVVCSS+ V FVHYLPG    L +L
Subjt:  DLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCCCAATCCCTCCACATTTCTCCCGTTCCTTTCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGTCTGCGCTTTTCCC
ACTGGAAGACTTGCTGTTGCCGTCCGACGCCCATGATTTGGTGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCAGAGCCGTGTTCAGTGTCGGATGGTGGTTCTGGG
TTGACGCCGTTGTCTGCAGTTCTGTTGTCGTATCCTTCGTCCACTACCTCCCAGGTTCTCTAATCTTGCTTCGCTCTTTATTCATTTACCAGTCCACGCCAGGTATAATT
CGCGCTTATGGTTTTTTACGTTGCTCTAGTATTGGGGTTGTAGAAAATAAAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCCGAGTACCTTCCAGCAGGTTTTTGAC
GAGGCTTGAACGAAAGAATAGAGACAGCGTCGGACGGCAACAACGAGTCTTCCAGTGGGACAAGCGCATATGGCGGAATTTGAAAGGCAAATTCAGTGGCGGCAAAAGCG
AAAAAGAAAAGAGAAGTGAAAGGAACGAGAGAAATGTGGAGGGATTGGGGTTCATTATCTCGATCGGAGCTCCCAGCCAGGACGACAACGGAGAGGGAGGGGAGCGGCGG
AGAGAAAGAAGGAAGTGGTGGAGAGAAAAGAGAGTAATGCGGAGCCGCTGGACCTTTTGTAAGAGGCACTTCTGGAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAACCCCAATCCCTCCACATTTCTCCCGTTCCTTTCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGTCTGCGCTTTTCCC
ACTGGAAGACTTGCTGTTGCCGTCCGACGCCCATGATTTGGTGGAGCTGTGGTCAATTTTCGGCCCAGGTGTCGCCAGAGCCGTGTTCAGTGTCGGATGGTGGTTCTGGG
TTGACGCCGTTGTCTGCAGTTCTGTTGTCGTATCCTTCGTCCACTACCTCCCAGGTTCTCTAATCTTGCTTCGCTCTTTATTCATTTACCAGTCCACGCCAGGTATAATT
CGCGCTTATGGTTTTTTACGTTGCTCTAGTATTGGGGTTGTAGAAAATAAAGTGTCTGGATTGGAGGTTCAATCTTGGCTTCTCCGAGTACCTTCCAGCAGGTTTTTGAC
GAGGCTTGAACGAAAGAATAGAGACAGCGTCGGACGGCAACAACGAGTCTTCCAGTGGGACAAGCGCATATGGCGGAATTTGAAAGGCAAATTCAGTGGCGGCAAAAGCG
AAAAAGAAAAGAGAAGTGAAAGGAACGAGAGAAATGTGGAGGGATTGGGGTTCATTATCTCGATCGGAGCTCCCAGCCAGGACGACAACGGAGAGGGAGGGGAGCGGCGG
AGAGAAAGAAGGAAGTGGTGGAGAGAAAAGAGAGTAATGCGGAGCCGCTGGACCTTTTGTAAGAGGCACTTCTGGAGGTAA
Protein sequenceShow/hide protein sequence
MNPNPSTFLPFLSLLFSFFAFAASGFAFQIPPSALFPLEDLLLPSDAHDLVELWSIFGPGVARAVFSVGWWFWVDAVVCSSVVVSFVHYLPGSLILLRSLFIYQSTPGII
RAYGFLRCSSIGVVENKVSGLEVQSWLLRVPSSRFLTRLERKNRDSVGRQQRVFQWDKRIWRNLKGKFSGGKSEKEKRSERNERNVEGLGFIISIGAPSQDDNGEGGERR
RERRKWWREKRVMRSRWTFCKRHFWR