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Lag0018171 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018171
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:17987904..17988878
RNA-Seq ExpressionLag0018171
SyntenyLag0018171
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GFY90877.1 hypothetical protein Acr_07g0010730 [Actinidia rufa]3.6e-1439.87Show/hide
Query:  KFVAETRAEAEADQRWPRLRLTKGGRDKEEPRREIRTIFGGPARGG-SSRKRKVIAREA-RFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALV
        K+VA+       ++R+   R T G          I+TI GG   GG S+  RK  AR A R   E     F       PP+ F+  +   +H PH+DALV
Subjt:  KFVAETRAEAEADQRWPRLRLTKGGRDKEEPRREIRTIFGGPARGG-SSRKRKVIAREA-RFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALV

Query:  VTLMNTVTKIVNLVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
         T+         +V+DC S YNAILGRP L  +K ITSTYH  +KFPT  G+G VKG+
Subjt:  VTLMNTVTKIVNLVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

XP_022150028.1 uncharacterized protein LOC111018300 [Momordica charantia]4.3e-1532.5Show/hide
Query:  GGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM---------------------
        G  D + P REIRTI GGP      RKRK   RE R       +Y   +AK    +EF+E EA  +  PHND LV+TL                      
Subjt:  GGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM---------------------

Query:  ---------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
                                                      ++T I++ LV+D  S+YNAILGRPT+H +K I STYHQ + FPT  G+G +K E
Subjt:  ---------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

XP_022155902.1 uncharacterized protein LOC111022905 [Momordica charantia]3.2e-1835.03Show/hide
Query:  RLTKGGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM-----------------
        ++T+ G + + P REI+TI GGP    S RK KV  REAR    +  +Y+ ++A     +EF++ EA  +  PHNDALV+TL                  
Subjt:  RLTKGGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM-----------------

Query:  ------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
                                                   +VTK+V  LV+D  S+YNAILGR T+H +K I STYHQ +KFPT  GVG +KGE
Subjt:  ------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

XP_022158093.1 uncharacterized protein LOC111024662 [Momordica charantia]8.6e-1633.5Show/hide
Query:  DKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLMNT----------------------
        D + P +EI+TIFGGP      +KRK   +EAR  P Y  +Y          ++F+E E   +  PHNDALV+TL  T                      
Subjt:  DKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLMNT----------------------

Query:  --------------------------------------------VTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
                                                    +TKIV  LV+D  S+YNAILGRPT+H +K I STYH+ LKFPT  G+  VKGE
Subjt:  --------------------------------------------VTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

XP_022158414.1 uncharacterized protein LOC111024904 [Momordica charantia]2.1e-1437.35Show/hide
Query:  RDKEEPRRE-----IRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPP---LEFTEVEAASIHQPHNDALV-------------------
        R +  PRRE     I TIFGGP  G S  KRK +AREAR +        V + + H P   + F + +   +H PHNDALV                   
Subjt:  RDKEEPRRE-----IRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPP---LEFTEVEAASIHQPHNDALV-------------------

Query:  ----VTLMNTVTKIVNL----VMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
            VT+    T++  +    V+D  SAYNAI GRP +H  + + ST HQ+LK+ T N VG+V+GE
Subjt:  ----VTLMNTVTKIVNL----VMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

TrEMBL top hitse value%identityAlignment
A0A2N9ERV4 Uncharacterized protein3.8e-1742.94Show/hide
Query:  RLTKGGRDKEE-------PRREIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVH--LAKAHPP---------LEFTEVEAASIHQPHNDALVVT
        RLTK    KE+       P  EIRTI GG A GG+SR  RK  AR+            VH  +    PP         + F+E +A   HQPH+DALVVT
Subjt:  RLTKGGRDKEE-------PRREIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVH--LAKAHPP---------LEFTEVEAASIHQPHNDALVVT

Query:  L------MNTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
        +        TV+K V+ L+++C SAYNAI+ +PTL+ ++ +TSTYH LLKFPT++G+G V+G+
Subjt:  L------MNTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

A0A2N9F5L1 RNase H domain-containing protein2.6e-1841.1Show/hide
Query:  DKEEPRREIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVHLAKAHPP---------LEFTEVEAASIHQPHNDALVVTL---------------
        ++ EP  EIRTI GGPA GG+SR  R+  AR+A      Q           PP         + F+E +A   HQPH+DALV+T+               
Subjt:  DKEEPRREIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVHLAKAHPP---------LEFTEVEAASIHQPHNDALVVTL---------------

Query:  -------MNTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
                 TV+K V+ LV++C SAYNAI+GRPTL+ ++ +TSTYH LLKFPT++G+G V+G+
Subjt:  -------MNTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

A0A2N9GJ30 Ribonuclease H1.1e-1636.92Show/hide
Query:  KFVAETRAEAEADQRWPRLRLTKGGRDKEEPR---REIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDA
        KFV + + E   + R PR    K  R ++ PR    EIRTI GG A GG+SR  RK  AR+A      Q      L      + F+E +A +IH PH+DA
Subjt:  KFVAETRAEAEADQRWPRLRLTKGGRDKEEPR---REIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDA

Query:  LVVTL---------------------MNTVTKIVN--------------LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
        LVVTL                     +  V+ ++               LV+DC SAYN I+GRPTL+ ++ +TSTYH L++FPT++G+G +KG+
Subjt:  LVVTL---------------------MNTVTKIVN--------------LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

A0A2N9GRM8 Uncharacterized protein2.9e-1742.57Show/hide
Query:  RDKEEPRR-----EIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVH--LAKAHPP---------LEFTEVEAASIHQPHNDALVVTLMNTVTKI
        R++ EP R     EIRTI GGPA GG+SR  RK  AR+            VH  +    PP         + F+E +A   HQPH+DALV+T+       
Subjt:  RDKEEPRR-----EIRTIFGGPARGGSSR-KRKVIAREARFQPEYQGMYFVH--LAKAHPP---------LEFTEVEAASIHQPHNDALVVTLMNTVTKI

Query:  VNLVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
               I+AYNAI+GRPTL+ ++ +TSTYH LLKFPT++G+G V+G+
Subjt:  VNLVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

A0A6J1DQL9 uncharacterized protein LOC1110229051.5e-1835.03Show/hide
Query:  RLTKGGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM-----------------
        ++T+ G + + P REI+TI GGP    S RK KV  REAR    +  +Y+ ++A     +EF++ EA  +  PHNDALV+TL                  
Subjt:  RLTKGGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFTEVEAASIHQPHNDALVVTLM-----------------

Query:  ------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE
                                                   +VTK+V  LV+D  S+YNAILGR T+H +K I STYHQ +KFPT  GVG +KGE
Subjt:  ------------------------------------------NTVTKIVN-LVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGCTGAGGCCGAGCCGACCATTACCATGGTCGAGGCCGAGCTGACCATGACCATGGTCGAGGCCGAGTACATTCCTTTGAAGTTTGTTGCCGAAACTAGGGCTGA
GGCTGAGGCCGACCAGAGATGGCCAAGGCTGAGGCTGACCAAAGGTGGCCGAGACAAAGAAGAACCCCGGCGAGAGATCAGAACCATCTTTGGAGGACCAGCTAGAGGAG
GTTCAAGTAGGAAAAGAAAAGTTATTGCCAGGGAAGCAAGGTTCCAACCAGAATACCAAGGTATGTACTTTGTCCATCTAGCAAAGGCACACCCTCCTTTGGAGTTCACT
GAGGTTGAGGCAGCAAGCATCCATCAGCCACATAATGATGCTCTGGTGGTCACTTTAATGAATACAGTGACGAAAATAGTAAACTTAGTCATGGATTGCATTTCAGCCTA
CAATGCAATCTTGGGAAGGCCGACCTTGCATGATATGAAGGTCATAACTTCAACTTATCATCAGTTGCTGAAGTTTCCAACTCAGAATGGTGTGGGAGTTGTCAAAGGGG
AATAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGCTGAGGCCGAGCCGACCATTACCATGGTCGAGGCCGAGCTGACCATGACCATGGTCGAGGCCGAGTACATTCCTTTGAAGTTTGTTGCCGAAACTAGGGCTGA
GGCTGAGGCCGACCAGAGATGGCCAAGGCTGAGGCTGACCAAAGGTGGCCGAGACAAAGAAGAACCCCGGCGAGAGATCAGAACCATCTTTGGAGGACCAGCTAGAGGAG
GTTCAAGTAGGAAAAGAAAAGTTATTGCCAGGGAAGCAAGGTTCCAACCAGAATACCAAGGTATGTACTTTGTCCATCTAGCAAAGGCACACCCTCCTTTGGAGTTCACT
GAGGTTGAGGCAGCAAGCATCCATCAGCCACATAATGATGCTCTGGTGGTCACTTTAATGAATACAGTGACGAAAATAGTAAACTTAGTCATGGATTGCATTTCAGCCTA
CAATGCAATCTTGGGAAGGCCGACCTTGCATGATATGAAGGTCATAACTTCAACTTATCATCAGTTGCTGAAGTTTCCAACTCAGAATGGTGTGGGAGTTGTCAAAGGGG
AATAG
Protein sequenceShow/hide protein sequence
MVAEAEPTITMVEAELTMTMVEAEYIPLKFVAETRAEAEADQRWPRLRLTKGGRDKEEPRREIRTIFGGPARGGSSRKRKVIAREARFQPEYQGMYFVHLAKAHPPLEFT
EVEAASIHQPHNDALVVTLMNTVTKIVNLVMDCISAYNAILGRPTLHDMKVITSTYHQLLKFPTQNGVGVVKGE