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Lag0018192 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018192
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:18585824..18586126
RNA-Seq ExpressionLag0018192
SyntenyLag0018192
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022155341.1 uncharacterized protein LOC111022474 [Momordica charantia]2.8e-2960.2Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C +  KVRGA+FMLR +A  WW+S+ AAEDHAN PV+W RFKDLLY+YYFP T++++K  EFL LTQG++TV QY+RKFT+LSRF    + T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]3.3e-3060.2Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+GA+FMLR +A  WW S+ AAED+AN P+ W RFK+LLYDYY+P+T+KD KE EFLHL QG ++V QY+RKFT+LSRFA +L+ T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
XP_022156330.1 uncharacterized protein LOC111023250 [Momordica charantia]1.0e-3163.27Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+GA+FMLR  A  WW S+ AAEDHAN PV+W RFKDLLYDYY+P+T+KD KE EFLH +QG +TV QY+RKFT+LSRFA +L+ T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
XP_022156985.1 uncharacterized protein LOC111023814 [Momordica charantia]2.0e-3064.21Show/hide
Query:  YMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        Y+ C+++ KV+G +FMLR  A  WW S+VA EDHAN  ++W RFKDLLYDYYFPKT+KD KE EFL LTQG+MTVV+Y++KFT+LSRFAP+++ T
Subjt:  YMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
XP_022158637.1 uncharacterized protein LOC111025088 [Momordica charantia]5.2e-3162.24Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+G +FMLR +A  WW SI  AEDHAN PV W RFKDLLYDYY+P+T+KD KE EFLHL QG +TV QY+RKFT+LSRFA + + T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
TrEMBL top hitse value%identityAlignment
A0A6J1DQ01 uncharacterized protein LOC1110232505.0e-3263.27Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+GA+FMLR  A  WW S+ AAEDHAN PV+W RFKDLLYDYY+P+T+KD KE EFLH +QG +TV QY+RKFT+LSRFA +L+ T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
A0A6J1DRF5 uncharacterized protein LOC1110224741.4e-2960.2Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C +  KVRGA+FMLR +A  WW+S+ AAEDHAN PV+W RFKDLLY+YYFP T++++K  EFL LTQG++TV QY+RKFT+LSRF    + T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
A0A6J1DRW8 uncharacterized protein LOC1110238149.5e-3164.21Show/hide
Query:  YMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        Y+ C+++ KV+G +FMLR  A  WW S+VA EDHAN  ++W RFKDLLYDYYFPKT+KD KE EFL LTQG+MTVV+Y++KFT+LSRFAP+++ T
Subjt:  YMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
A0A6J1DUM2 uncharacterized protein LOC1110232471.6e-3060.2Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+GA+FMLR +A  WW S+ AAED+AN P+ W RFK+LLYDYY+P+T+KD KE EFLHL QG ++V QY+RKFT+LSRFA +L+ T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
A0A6J1DXQ7 uncharacterized protein LOC1110250882.5e-3162.24Show/hide
Query:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
        +Y Y+ C+++ KV+G +FMLR +A  WW SI  AEDHAN PV W RFKDLLYDYY+P+T+KD KE EFLHL QG +TV QY+RKFT+LSRFA + + T
Subjt:  MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVST
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATGACTACATGAACTGTGATGAGCGTCTGAAGGTCAGAGGGGCGATATTTATGTTGAGGGATGATGCCCGCATGTGGTGGAAATCCATAGTTGCAGCGGAAGACCA
TGCTAACAATCCAGTCTCGTGGGAGAGGTTTAAGGACCTTCTATATGATTATTACTTTCCCAAGACTATCAAGGATGATAAAGAGACAGAATTTTTGCACCTAACCCAGG
GAAATATGACAGTGGTGCAATATCAGAGGAAATTCACTAAGCTCTCCCGCTTTGCTCCGGATTTGGTCAGCACTCCAGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATGACTACATGAACTGTGATGAGCGTCTGAAGGTCAGAGGGGCGATATTTATGTTGAGGGATGATGCCCGCATGTGGTGGAAATCCATAGTTGCAGCGGAAGACCA
TGCTAACAATCCAGTCTCGTGGGAGAGGTTTAAGGACCTTCTATATGATTATTACTTTCCCAAGACTATCAAGGATGATAAAGAGACAGAATTTTTGCACCTAACCCAGG
GAAATATGACAGTGGTGCAATATCAGAGGAAATTCACTAAGCTCTCCCGCTTTGCTCCGGATTTGGTCAGCACTCCAGATTAA
Protein sequenceShow/hide protein sequence
MYDYMNCDERLKVRGAIFMLRDDARMWWKSIVAAEDHANNPVSWERFKDLLYDYYFPKTIKDDKETEFLHLTQGNMTVVQYQRKFTKLSRFAPDLVSTPD