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Lag0018235 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018235
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr5:19944742..19945204
RNA-Seq ExpressionLag0018235
SyntenyLag0018235
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025406.1 reverse transcriptase [Cucumis melo var. makuwa]4.1e-1777.42Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LH+PEG I + KAK+IQEAFTLHVQKLANAQ+E +NFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]5.4e-1779.03Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LHVPEG I + KAK+IQEAFTLHVQKL NAQ+E KNFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

TYJ98381.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.6e-1673.85Show/hide
Query:  ENHCDMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEEN
        E   D+DS+NN LH+PEGSI + KAK+IQEAFTLHVQKLANAQ+E KNFE  FLYNVSS SQEE+
Subjt:  ENHCDMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEEN

TYK09768.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]4.1e-1777.42Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LH+PEG I + KAK+IQEAFTLHVQKLANAQ+E +NFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]3.5e-1666.67Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENEG----------QDGTG
        D+DS+NN LHVPEG I + KAK+IQEAFTLHVQKLANAQ+E KNFE  FLYNVSS SQEE+E           +DGTG
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENEG----------QDGTG

TrEMBL top hitse value%identityAlignment
A0A5A7SHU3 Reverse transcriptase2.0e-1777.42Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LH+PEG I + KAK+IQEAFTLHVQKLANAQ+E +NFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

A0A5A7VDK8 Transposon Ty3-I Gag-Pol polyprotein1.7e-1666.67Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENEG----------QDGTG
        D+DS+NN LHVPEGSI + KAK+IQEAFTLHVQKLANAQ+E KNFE  FLYNVSS SQEE+            +DGTG
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENEG----------QDGTG

A0A5A7VL78 RT_RNaseH_2 domain-containing protein2.6e-1779.03Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LHVPEG I + KAK+IQEAFTLHVQKL NAQ+E KNFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

A0A5D3BI77 Retrovirus-related Pol polyprotein from transposon 17.67.6e-1773.85Show/hide
Query:  ENHCDMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEEN
        E   D+DS+NN LH+PEGSI + KAK+IQEAFTLHVQKLANAQ+E KNFE  FLYNVSS SQEE+
Subjt:  ENHCDMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEEN

A0A5D3CEW5 Transposon Ty3-I Gag-Pol polyprotein2.0e-1777.42Show/hide
Query:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE
        D+DSINN LH+PEG I + KAK+IQEAFTLHVQKLANAQ+E +NFEP FLYNVSS SQEE+E
Subjt:  DMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVSSESQEENE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGCGATTTCCGGCGTCAATCAAGGTCGGATTTCAGGTGATAATCTTGGGGTTTCGGTCTAAAGTGGCATTTACAGGCGTAATCTGGATGGATTATGCCAGATTGTC
TTTTGCTGTAGCGGTGATGAGGCGGACTGGGTGCGACGGGACTTGGGAGAATCATTGTGATATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGATCGATCATAA
GGAGCAAGGCAAAGAGGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCACAGCAAGAGGCAAAGAATTTTGAACCCAATTTTTTGTATAATGTTAGT
TCAGAAAGTCAAGAAGAGAATGAAGGTCAAGATGGCACGGGAAAAGTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGCGATTTCCGGCGTCAATCAAGGTCGGATTTCAGGTGATAATCTTGGGGTTTCGGTCTAAAGTGGCATTTACAGGCGTAATCTGGATGGATTATGCCAGATTGTC
TTTTGCTGTAGCGGTGATGAGGCGGACTGGGTGCGACGGGACTTGGGAGAATCATTGTGATATGGATTCAATCAATAATCCATTGCATGTACCTGAAGGATCGATCATAA
GGAGCAAGGCAAAGAGGATACAAGAGGCTTTCACATTGCATGTTCAAAAGCTAGCAAATGCACAGCAAGAGGCAAAGAATTTTGAACCCAATTTTTTGTATAATGTTAGT
TCAGAAAGTCAAGAAGAGAATGAAGGTCAAGATGGCACGGGAAAAGTTGTGTAG
Protein sequenceShow/hide protein sequence
MGRFPASIKVGFQVIILGFRSKVAFTGVIWMDYARLSFAVAVMRRTGCDGTWENHCDMDSINNPLHVPEGSIIRSKAKRIQEAFTLHVQKLANAQQEAKNFEPNFLYNVS
SESQEENEGQDGTGKVV