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Lag0018245 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018245
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:20278159..20278680
RNA-Seq ExpressionLag0018245
SyntenyLag0018245
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.8e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +E+NQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+HS + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+H+ + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

KAA0063719.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.9e-3758.82Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   ++VDNS + KQRTSVFD IKP TTR SVFQR+SM   +E+NQC  ST  R STF+RLS+ST KK +PSTS FDR K+T+DQ +R+M  L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+HS + SRMKRK S+ INTEGSL +KP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-3759.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST TR S F+RLS+ST KK +PSTS FDR K+ +DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+HS + SRMKRK  + INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+H+ + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

TrEMBL top hitse value%identityAlignment
A0A5A7TQ06 Retrotransposon gag protein4.8e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +E+NQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+HS + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

A0A5A7UI09 Retrotransposon gag protein2.1e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+H+ + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

A0A5D3BLW3 Retrotransposon gag protein1.1e-3759.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST TR S F+RLS+ST KK +PSTS FDR K+ +DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+HS + SRMKRK  + INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

A0A5D3CCI8 Retrotransposon gag protein2.1e-3859.48Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR SVFQR+SM   +EKNQC  ST  R S F+RLS+ST KK +PSTS FDR K+T+DQ +R+M +L+ K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+D+K+H+ + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

A0A5D3D209 Retrotransposon gag protein2.4e-3758.82Show/hide
Query:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE
        Y   E+VDNS + KQRTSVFD IKP TTR  VFQR+SM   +E+NQC  ST  R S F+RLS+ST KK +PSTS FDR K+T++Q KR+M + + K F E
Subjt:  YIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKMNNLEVKLFDE

Query:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED
         N+DNK+HS + SRMKRK S+ INTEGSL VKP  II TNP +EG ++  DE+
Subjt:  VNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAACCCTCTCCAAAACTTTCCATAAAAAGGAAAAAAGGAAACTTTGCAACTTCCTACTACATCGACATAGAAAAAGTTGACAATTCCAAGAAGGGTAAACAGAGGAC
TTCCGTCTTCGATCACATCAAACCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGAGACAAAAGAAAAAAATCAATGTTTGGTGTCCACCTCCACTC
GACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATTGAAAAAGATTCAACCTTCAACATCTGTTTTTGATCGCTTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATG
AACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAATAAGCTTCATAGTAGCATTTTGTCACGTATGAAGAGGAAATTCTCTATTCTCATAAATACAGAAGG
TTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAACCCTCTCCAAAACTTTCCATAAAAAGGAAAAAAGGAAACTTTGCAACTTCCTACTACATCGACATAGAAAAAGTTGACAATTCCAAGAAGGGTAAACAGAGGAC
TTCCGTCTTCGATCACATCAAACCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTATGGTCGAGACAAAAGAAAAAAATCAATGTTTGGTGTCCACCTCCACTC
GACCTTCAACTTTCCAAAGGCTAAGTGTCTCCACATTGAAAAAGATTCAACCTTCAACATCTGTTTTTGATCGCTTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATG
AACAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAATAAGCTTCATAGTAGCATTTTGTCACGTATGAAGAGGAAATTCTCTATTCTCATAAATACAGAAGG
TTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTGAAGGATCTGATCAAGACCATGATGAAGATTAG
Protein sequenceShow/hide protein sequence
MKPSPKLSIKRKKGNFATSYYIDIEKVDNSKKGKQRTSVFDHIKPPTTRPSVFQRMSMVETKEKNQCLVSTSTRPSTFQRLSVSTLKKIQPSTSVFDRFKVTSDQPKRKM
NNLEVKLFDEVNNDNKLHSSILSRMKRKFSILINTEGSLKVKPNLIILTNPTSEGSDQDHDED