; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018247 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018247
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptiontRNA:m(4)X modification enzyme TRM13
Genome locationchr5:20359057..20359442
RNA-Seq ExpressionLag0018247
SyntenyLag0018247
Gene Ontology termsGO:0008152 - metabolic process (biological process)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575728.1 tRNA:m(4)X modification enzyme TRM13, partial [Cucurbita argyrosperma subsp. sororia]7.1e-1758.06Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
KAG7014284.1 tRNA:m(4)X modification enzyme TRM13-like protein [Cucurbita argyrosperma subsp. argyrosperma]7.1e-1758.06Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
XP_022954384.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita moschata]7.1e-1758.06Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
XP_022991622.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita maxima]9.2e-1756.99Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RN++YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
XP_023547814.1 tRNA:m(4)X modification enzyme TRM13 homolog [Cucurbita pepo subsp. pepo]7.1e-1758.06Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
TrEMBL top hitse value%identityAlignment
A0A1S3CFX2 tRNA:m(4)X modification enzyme TRM133.2e-1554.84Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM G +FHRLLGKIRALH                           K  F+  HVLQQA ILGNL+E GVLRNYDGG+Q EGNRSYG
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
A0A5D3CJH7 tRNA:m(4)X modification enzyme TRM133.2e-1554.84Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM G +FHRLLGKIRALH                           K  F+  HVLQQA ILGNL+E GVLRNYDGG+Q EGNRSYG
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
A0A6J1CSZ2 tRNA:m(4)X modification enzyme TRM132.9e-1656.99Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLLGKIRALHG                          K  F+  HVLQQA ILGNLEE GVLRN DGGEQC+ N SYG
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
A0A6J1GSU8 tRNA:m(4)X modification enzyme TRM133.4e-1758.06Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RNI+YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
A0A6J1JMC6 tRNA:m(4)X modification enzyme TRM134.5e-1756.99Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
        M RN++YGM GAEFHRLL KIRALHG                          K  F+  HVLQQA ILGN+EE GVLRNYDGGEQCEGNRS G
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G01880.1 methyltransferases3.5e-0634.88Show/hide
Query:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQC
        M RN++Y M  ++FH+L+ KI  +HG                          K  F+  HVLQQ  ILGNLEE GVL+  +   +C
Subjt:  MMRNIIYGMFGAEFHRLLGKIRALHG--------------------------KFHFKRIHVLQQALILGNLEESGVLRNYDGGEQC

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAGGAATATCATTTATGGCATGTTTGGAGCTGAGTTTCATCGGCTTCTTGGAAAGATTAGAGCTCTTCATGGAAAATTCCATTTCAAGAGAATACATGTTCTGCA
GCAGGCGTTGATTCTTGGAAACTTGGAAGAATCTGGAGTGCTAAGGAATTATGATGGAGGGGAACAATGTGAGGGTAACAGATCATATGGCATGGCAATGAGGCTAATGC
TGTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGATGAGGAATATCATTTATGGCATGTTTGGAGCTGAGTTTCATCGGCTTCTTGGAAAGATTAGAGCTCTTCATGGAAAATTCCATTTCAAGAGAATACATGTTCTGCA
GCAGGCGTTGATTCTTGGAAACTTGGAAGAATCTGGAGTGCTAAGGAATTATGATGGAGGGGAACAATGTGAGGGTAACAGATCATATGGCATGGCAATGAGGCTAATGC
TGTCCTAG
Protein sequenceShow/hide protein sequence
MMRNIIYGMFGAEFHRLLGKIRALHGKFHFKRIHVLQQALILGNLEESGVLRNYDGGEQCEGNRSYGMAMRLMLS