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Lag0018279 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018279
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr5:21188950..21193308
RNA-Seq ExpressionLag0018279
SyntenyLag0018279
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]3.8e-0673.68Show/hide
Query:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L+  GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]6.8e-0868.18Show/hide
Query:  ESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFREANECSL
        ESGQ ADS+ L+ WGQDR+ SWEHN TRWNSLLP FRE  + S+
Subjt:  ESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFREANECSL
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-0771.79Show/hide
Query:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L+ WGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFRE
TrEMBL top hitse value%identityAlignment
A0A5A7SJB7 Ty3-gypsy retrotransposon protein6.5e-0468.97Show/hide
Query:  ISLTLWGQDRMGSWEHNRTRWNSLLPDFR
        + L+ WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLTLWGQDRMGSWEHNRTRWNSLLPDFR
A0A5A7SPG1 Pol protein1.8e-0673.68Show/hide
Query:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFR
        GESGQ  DSI L+  GQDR+GSWEHN TRWN LLP FR
Subjt:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFR
A0A5A7U2P4 Integrase catalytic domain-containing protein3.3e-0868.18Show/hide
Query:  ESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFREANECSL
        ESGQ ADS+ L+ WGQDR+ SWEHN TRWNSLLP FRE  + S+
Subjt:  ESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFREANECSL
A0A5D3C3J6 Gag/pol protein5.7e-0871.79Show/hide
Query:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFRE
        GESGQ  DSI L+ WGQDR+GSWEHN TRWNS +P FR+
Subjt:  GESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFRE
A0A5D3E3M6 Uncharacterized protein6.5e-0468.97Show/hide
Query:  ISLTLWGQDRMGSWEHNRTRWNSLLPDFR
        + L+ WGQD++GSWEHN  RWNSL+PDFR
Subjt:  ISLTLWGQDRMGSWEHNRTRWNSLLPDFR
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTAACACTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTT
CCCGACTTTAGGGAAGCAAATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGTCCTACCCTCTCAATGGCACGAGAGGTCGATCCAAGAGATCA
TTAAGTCAACAGACCGATCATCCAGGGAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAAT
AGGCCGATCCAAGAGACCATCAAGTCAACAGACCGATCATCCAGGAGGATCAACAAGCTAACAACCGATCCAACAAATCAACAAGCCAACAGGCCGATCCAAGAG
ATCATTAAGTCAACAGACCGATCATCCAGGAAGATCAACAAGCCAACAAACCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGC
CCAATAGTTATTGTGTCATTCAAAGAAGGAATTTCCAGCGAAGAAAATCAAAGGCGGTTGCTGCGTTTTCGTTCCTGGAGCATCGTTGGCGAAGAACGGTCAAGT
CTACAACGGAGGAAAGATTGGAAGAAATATACCGCCATTGGTTGTTGTTTTGAACCAGAGCGTCGTTGGTCGCTGTTTAGTATTCATTGGATCGTGGGAATTGTG
GTTGAAGCATCAAAACACCCATTGAGGGTTGAACCGGACACACACATATCTCCACAATGGTATGATATTGTCCACTATGGGCATAAGCCCTCATGGCTTTGCTTT
TGGTTCACCCCAAAAGGCCTCATGCCAATGGAGATACTTGTCCTCCCTTATATAGCCATGATCACCCCCTTATCTAACCAATGTGGGACTTTGGTCACACTCCCA
ACAGAAGACGCTCGAATTAGTTGGCACTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTAACACTTTGGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTT
CCCGACTTTAGGGAAGCAAATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGTCCTACCCTCTCAATGGCACGAGAGGTCGATCCAAGAGATCA
TTAAGTCAACAGACCGATCATCCAGGGAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGCCAAT
AGGCCGATCCAAGAGACCATCAAGTCAACAGACCGATCATCCAGGAGGATCAACAAGCTAACAACCGATCCAACAAATCAACAAGCCAACAGGCCGATCCAAGAG
ATCATTAAGTCAACAGACCGATCATCCAGGAAGATCAACAAGCCAACAAACCGATCCAAGAGATCATCACGCCAACAGGCCGATCATCCAAGAAGATCAACAAGC
CCAATAGTTATTGTGTCATTCAAAGAAGGAATTTCCAGCGAAGAAAATCAAAGGCGGTTGCTGCGTTTTCGTTCCTGGAGCATCGTTGGCGAAGAACGGTCAAGT
CTACAACGGAGGAAAGATTGGAAGAAATATACCGCCATTGGTTGTTGTTTTGAACCAGAGCGTCGTTGGTCGCTGTTTAGTATTCATTGGATCGTGGGAATTGTG
GTTGAAGCATCAAAACACCCATTGAGGGTTGAACCGGACACACACATATCTCCACAATGGTATGATATTGTCCACTATGGGCATAAGCCCTCATGGCTTTGCTTT
TGGTTCACCCCAAAAGGCCTCATGCCAATGGAGATACTTGTCCTCCCTTATATAGCCATGATCACCCCCTTATCTAACCAATGTGGGACTTTGGTCACACTCCCA
ACAGAAGACGCTCGAATTAGTTGGCACTTATAG
Protein sequenceShow/hide protein sequence
MGESGQYADSISLTLWGQDRMGSWEHNRTRWNSLLPDFREANECSLKWLLRVLNKGSYPLNGTRGRSKRSLSQQTDHPGRSTSQQADPRDHHANRPIIQEDQQAN
RPIQETIKSTDRSSRRINKLTTDPTNQQANRPIQEIIKSTDRSSRKINKPTNRSKRSSRQQADHPRRSTSPIVIVSFKEGISSEENQRRLLRFRSWSIVGEERSS
LQRRKDWKKYTAIGCCFEPERRWSLFSIHWIVGIVVEASKHPLRVEPDTHISPQWYDIVHYGHKPSWLCFWFTPKGLMPMEILVLPYIAMITPLSNQCGTLVTLP
TEDARISWHL