CuGenDBv2

Gene ID	Lag0018287
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	polyadenylate-binding protein RBP47-like
Genome location	chr5:21514024..21516591
RNA-Seq Expression	Lag0018287
Synteny	Lag0018287
Gene Ontology terms	GO:0005829 - cytosol (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function)
InterPro domains	IPR000504 - RNA recognition motif domain IPR002347 - Short-chain dehydrogenase/reductase SDR IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR020904 - Short-chain dehydrogenase/reductase, conserved site IPR035979 - RNA-binding domain superfamily IPR036291 - NAD(P)-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7010966.1 Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.9e-32

94.87

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

XP_022148600.1 polyadenylate-binding protein RBP47 [Momordica charantia]

5.5e-32

94.74

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Query:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQT+RLS G
Subjt:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

XP_022943942.1 polyadenylate-binding protein RBP47-like [Cucurbita moschata]

1.9e-32

94.87

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

XP_022986538.1 polyadenylate-binding protein RBP47-like [Cucurbita maxima]

1.9e-32

94.87

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

XP_038901011.1 polyadenylate-binding protein RBP47 [Benincasa hispida]

1.2e-31

91.03

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDL+QPFSKFG++VSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D3C6 polyadenylate-binding protein RBP47

2.7e-32

94.74

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Query:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQT+RLS G
Subjt:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

A0A6J1FUF1 polyadenylate-binding protein RBP47-like

9.2e-33

94.87

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

A0A6J1G6T8 polyadenylate-binding protein RBP47-like

2.3e-31

93.42

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Query:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        GESNNTTIFVGGLDSDVSDEDL+QPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQ VRLS G
Subjt:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

A0A6J1JGT7 polyadenylate-binding protein RBP47-like

9.2e-33

94.87

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

A0A6J1KYU5 polyadenylate-binding protein RBP47-like

1.0e-31

92.31

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GESNNTTIFVGGLDSDVSDEDL+QPFSKFGEIVSVKIPIGKGCGFVQFANRKN EDAIQGLNG VIGKQ VRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

SwissProt top hits

e value

%identity

Alignment

F4I3B3 Polyadenylate-binding protein RBP47A

1.3e-28

75.95

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Query:  VSHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        +S GESNN+TIFVGGLD+DV++EDL QPFS FGE+VSVKIP+GKGCGFVQFANR++ E+AI  LNG VIGK TVRLS G
Subjt:  VSHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Q0WW84 Polyadenylate-binding protein RBP47B

4.5e-29

78.21

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GES N TIFVGG+D DV DEDLRQPFS+FGE+VSVKIP+GKGCGFVQFA+RK+ EDAI+ LNG VIGK TVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Q9LEB3 Polyadenylate-binding protein RBP47

4.7e-26

70.51

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S G+S+NTTIFVGGLDS+V+DE+LRQ F++FGE+VSVKIP GKGCGFVQF++R + ++AIQ L+GA+IGKQ VRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Q9SX79 Polyadenylate-binding protein RBP47C

1.5e-27

76.32

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Query:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        G+  NTTIFVGGLDS V+DEDL+QPF++FGEIVSVKIP+GKGCGFVQF NR N E+A++ LNG VIGKQTVRLS G
Subjt:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Q9SX80 Polyadenylate-binding protein RBP47C'

1.3e-28

76.92

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S G++ NTTIFVGGLDS V+DEDL+QPFS+FGEIVSVKIP+GKGCGFVQF NR N E+A++ LNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Arabidopsis top hits

e value

%identity

Alignment

AT1G47490.1 RNA-binding protein 47C

1.0e-28

76.32

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Query:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        G+  NTTIFVGGLDS V+DEDL+QPF++FGEIVSVKIP+GKGCGFVQF NR N E+A++ LNG VIGKQTVRLS G
Subjt:  GESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

AT1G47500.1 RNA-binding protein 47C'

9.4e-30

76.92

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S G++ NTTIFVGGLDS V+DEDL+QPFS+FGEIVSVKIP+GKGCGFVQF NR N E+A++ LNG VIGKQTVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

AT1G49600.1 RNA-binding protein 47A

9.4e-30

75.95

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Query:  VSHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        +S GESNN+TIFVGGLD+DV++EDL QPFS FGE+VSVKIP+GKGCGFVQFANR++ E+AI  LNG VIGK TVRLS G
Subjt:  VSHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

AT3G19130.1 RNA-binding protein 47B

3.2e-30

78.21

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Query:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        S GES N TIFVGG+D DV DEDLRQPFS+FGE+VSVKIP+GKGCGFVQFA+RK+ EDAI+ LNG VIGK TVRLS G
Subjt:  SHGESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

AT5G54900.1 RNA-binding protein 45A

1.5e-19

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Query:  ESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG
        + NNTTIFVGGLD++V+D++L+  F +FGE++ VKIP GK CGFVQ+AN+ + E A+  LNG  +G Q++RLS G
Subjt:  ESNNTTIFVGGLDSDVSDEDLRQPFSKFGEIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCG

Sequences

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CDS sequence

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ATGGTTGAACTAATGGGTACTCCTGATCAAACTGCTAAGGCAAAGCAGTTGATTAATGAGGTTCTTTCTAAGGCTGAATCTGGAGGTTCTGGCATAGAATCGCGAAGATT
AACTAGTCCATCAGGATCTGAGCAGTTGGTTTGGTTATTGGTGAAGGTGGTGAGACTATCAAAAGTATGCAAGCTAGGACCGGAGCTCGTATTTAGGTCTGTTCACTCTG
TATATATATACGTTTCACATGGGGAGTCAAACAATACTACTATATTTGTTGGCGGTCTTGATTCTGATGTTAGTGACGAAGATCTCAGACAACCTTTCTCTAAATTTGGC
GAGATAGTCTCGGTGAAAATCCCAATTGGAAAAGGATGTGGATTTGTGCAGTTCGCCAACAGAAAGAATGTTGAGGATGCAATACAAGGACTGAATGGAGCAGTTATTGG
CAAGCAAACTGTTCGTCTCTCCTGTGGAGAGGTGATTCTAATAACCAATGGAATGGGGGGCGTTATGGAGGTCAAGGTTATGGTGGATATGGTGGTTACTACTCTGTACC
ACAACATTAAGACACAAACATGCATGCCACATCTGCTGCAGTTAATGGGTCATCTTGAGAAAAGGGTTTCAGCATATTGTGCATCAAAATGGGCTATTGAAGGTTTAACC
AAATCAATAGCGAAAGAGTTGCCAGAAGGAATGACCATTATGACACTTCACCCTGGCGTTATAAACACAGACATGCTTGCCACTTGCTTTGGCCCTGATTTAGCTACCAA
GTATCAAAATCTTGAACCATGGTAA

mRNA sequence

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Protein sequence

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MVELMGTPDQTAKAKQLINEVLSKAESGGSGIESRRLTSPSGSEQLVWLLVKVVRLSKVCKLGPELVFRSVHSVYIYVSHGESNNTTIFVGGLDSDVSDEDLRQPFSKFG
EIVSVKIPIGKGCGFVQFANRKNVEDAIQGLNGAVIGKQTVRLSCGEVILITNGMGGVMEVKVMVDMVVTTLYHNIKTQTCMPHLLQLMGHLEKRVSAYCASKWAIEGLT
KSIAKELPEGMTIMTLHPGVINTDMLATCFGPDLATKYQNLEPW

Lag0018287 (gene) of Sponge gourd (AG-4) v1 genome