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Lag0018288 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018288
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr5:21618734..21619066
RNA-Seq ExpressionLag0018288
SyntenyLag0018288
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1554.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLL+ELQ +ES+ K KG+   KGEANVA S +KF +GS+SGTKS+P +S SK+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

KAA0058447.1 gag/pol protein [Cucumis melo var. makuwa]5.2e-1654.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLL+ELQ +ES+ K KG+   KGEANVA S +KF KGS+SGTKS+P +S +K+++K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

KAA0067084.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1554.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLLSELQ +ES+ K KG+   KGE NVA S +KF KGS+SGTKS+P +S +K+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

TYK00056.1 gag/pol protein [Cucumis melo var. makuwa]2.0e-1554.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLLSELQ +ES+ K KG+   KGE NVA S +KF KGS+SGTKS+P +S +K+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

XP_038874988.1 uncharacterized protein LOC120067510 [Benincasa hispida]3.9e-1657.43Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKGKALVQAVQGKGKAKVMVDKGRIFYCNADG
        M K QFNLT+LL          K+KGK  ++ EA+VAHSK+KF KG SSGTK+V Q+S+SK+IQK KG+KGKA   A +GKGK K + DKG+ F+CN DG
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKGKALVQAVQGKGKAKVMVDKGRIFYCNADG

Query:  H
        H
Subjt:  H

TrEMBL top hitse value%identityAlignment
A0A5A7SMN4 Gag/pol protein9.5e-1654.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLL+ELQ +ES+ K KG+   KGEANVA S +KF +GS+SGTKS+P +S SK+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

A0A5A7T1U3 Gag/pol protein1.2e-1547.32Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKGKALVQAVQGKGKAKVMVDKGRIFYCNADG
        MNKI++N+TTLL ELQ ++S++  K     +GE NVAHS+           +  P +S SK+IQKRKG KGK+   A +GKGK K+ + KG+ FYCN DG
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKGKALVQAVQGKGKAKVMVDKGRIFYCNADG

Query:  HWK--CMSLLPR
        HWK  C+  L +
Subjt:  HWK--CMSLLPR

A0A5A7UUN7 Gag/pol protein2.5e-1654.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLL+ELQ +ES+ K KG+   KGEANVA S +KF KGS+SGTKS+P +S +K+++K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

A0A5A7VI97 Gag/pol protein9.5e-1654.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLLSELQ +ES+ K KG+   KGE NVA S +KF KGS+SGTKS+P +S +K+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

A0A5D3BP59 Gag/pol protein9.5e-1654.81Show/hide
Query:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD
        MNKI + LTTLLSELQ +ES+ K KG+   KGE NVA S +KF KGS+SGTKS+P +S +K+ +K+KG +G KA + A +   KAK    KG  F+CN +
Subjt:  MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKG-KALVQAVQGKGKAKVMVDKGRIFYCNAD

Query:  GHWK
        GHWK
Subjt:  GHWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAAATTCAGTTCAACCTGACTACCCTCCTCTCGGAGTTACAGATTTATGAGTCCATGCAGAAAAGCAAGGGCAAGAATGTGGTGAAAGGAGAGGCCAATGTGGC
CCATTCCAAAAAGAAGTTCCTGAAGGGTTCATCCTCAGGGACTAAATCTGTACCTCAAGCTTCTTCATCGAAGCAAATCCAAAAGAGGAAGGGAGACAAGGGGAAGGCTC
TTGTGCAGGCTGTGCAAGGTAAGGGCAAGGCCAAGGTCATGGTCGACAAAGGCAGAATCTTCTACTGCAATGCAGATGGTCATTGGAAGTGCATGTCCCTGTTACCCCGC
TGA
mRNA sequenceShow/hide mRNA sequence
ATGAACAAAATTCAGTTCAACCTGACTACCCTCCTCTCGGAGTTACAGATTTATGAGTCCATGCAGAAAAGCAAGGGCAAGAATGTGGTGAAAGGAGAGGCCAATGTGGC
CCATTCCAAAAAGAAGTTCCTGAAGGGTTCATCCTCAGGGACTAAATCTGTACCTCAAGCTTCTTCATCGAAGCAAATCCAAAAGAGGAAGGGAGACAAGGGGAAGGCTC
TTGTGCAGGCTGTGCAAGGTAAGGGCAAGGCCAAGGTCATGGTCGACAAAGGCAGAATCTTCTACTGCAATGCAGATGGTCATTGGAAGTGCATGTCCCTGTTACCCCGC
TGA
Protein sequenceShow/hide protein sequence
MNKIQFNLTTLLSELQIYESMQKSKGKNVVKGEANVAHSKKKFLKGSSSGTKSVPQASSSKQIQKRKGDKGKALVQAVQGKGKAKVMVDKGRIFYCNADGHWKCMSLLPR