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Lag0018301 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018301
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr5:22203518..22204683
RNA-Seq ExpressionLag0018301
SyntenyLag0018301
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL97644.1 hypothetical protein [Colocasia esculenta]2.3e-1137.23Show/hide
Query:  AITAGLEDEWLLNSIGKSQPRTYVEFV---------------SRTDDGSQG---RP-----DHDHGRGR------AHPFGKFEKYTPTVVLQEQVLMEIR
        A+  G  D +L  ++G  QP T  E +               SR + G Q    RP     D D  +GR       HP   F  YTP  V  EQ+L EIR
Subjt:  AITAGLEDEWLLNSIGKSQPRTYVEFV---------------SRTDDGSQG---RP-----DHDHGRGR------AHPFGKFEKYTPTVVLQEQVLMEIR

Query:  NMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
        N   +++  RM+S+P KRD+++YC FHRDHGH T  C
Subjt:  NMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]2.0e-1231.91Show/hide
Query:  EIHQLFQRTSPSIPLAVHGSQRTTQASH------QPSNCQAT-ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD-------------DGSQG
        ++ +L  +        +   +RTT++ H           Q   +++  +L+A   G+ DE L  S GK  P T+ E +SR               + +  
Subjt:  EIHQLFQRTSPSIPLAVHGSQRTTQASH------QPSNCQAT-ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD-------------DGSQG

Query:  RPDHDHGRGRAHPFG----------------KFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
        R D    R    P G                KFEKYT T V  EQVLMEI+N  LLK+  RM ++  KR K +YCLFH DHGH+T++C
Subjt:  RPDHDHGRGRAHPFG----------------KFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]5.7e-1537.93Show/hide
Query:  ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD---------------DGSQGRPDHDHG--------------RGRAHPFGKFEKYTPTVVLQ
        +++  +L+A  +G+ DE L  S GK  P T+ E +SR                 DG +  P  +                  +  P  KFEKYTPT V  
Subjt:  ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD---------------DGSQGRPDHDHG--------------RGRAHPFGKFEKYTPTVVLQ

Query:  EQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
        EQVLMEI++  LLK+  RMK++  KR K +YCLFHRDHGH+T++C
Subjt:  EQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]2.4e-1339.26Show/hide
Query:  AGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQG-------------RPDHDHGRGRAHPFG-----------------KFEKYTPTVVLQEQVLMEIRNM
        +G++DE L  S GK  P T+ E +SR                    R D    R    P                   KFEKYTPT V  EQVLMEI++ 
Subjt:  AGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQG-------------RPDHDHGRGRAHPFG-----------------KFEKYTPTVVLQEQVLMEIRNM

Query:  GLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
         LLK+   MK+ P+KR K +YCLFHRDHGH+T +C
Subjt:  GLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]2.7e-1235.93Show/hide
Query:  QRTTQASH------QPSNCQ-ATISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVS---------------------RTDDGSQGRPDHDHG-----
        QRTT++ H           Q  ++++  +L+A  +G+ DE L  S GK  P T+ E +S                     RTD   +   D   G     
Subjt:  QRTTQASH------QPSNCQ-ATISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVS---------------------RTDDGSQGRPDHDHG-----

Query:  ---RGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRN
             +  P  KFEKYTPT V  EQVLMEI++  LLK+  RMK    KR K +YCLFHRDH H+T++
Subjt:  ---RGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRN

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128059.9e-1331.91Show/hide
Query:  EIHQLFQRTSPSIPLAVHGSQRTTQASH------QPSNCQAT-ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD-------------DGSQG
        ++ +L  +        +   +RTT++ H           Q   +++  +L+A   G+ DE L  S GK  P T+ E +SR               + +  
Subjt:  EIHQLFQRTSPSIPLAVHGSQRTTQASH------QPSNCQAT-ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD-------------DGSQG

Query:  RPDHDHGRGRAHPFG----------------KFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
        R D    R    P G                KFEKYT T V  EQVLMEI+N  LLK+  RM ++  KR K +YCLFH DHGH+T++C
Subjt:  RPDHDHGRGRAHPFG----------------KFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

A0A6J1DWY0 uncharacterized protein LOC1110252932.8e-1537.93Show/hide
Query:  ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD---------------DGSQGRPDHDHG--------------RGRAHPFGKFEKYTPTVVLQ
        +++  +L+A  +G+ DE L  S GK  P T+ E +SR                 DG +  P  +                  +  P  KFEKYTPT V  
Subjt:  ISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTD---------------DGSQGRPDHDHG--------------RGRAHPFGKFEKYTPTVVLQ

Query:  EQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
        EQVLMEI++  LLK+  RMK++  KR K +YCLFHRDHGH+T++C
Subjt:  EQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

A0A6J1DXW4 uncharacterized protein LOC1110255852.4e-1135.59Show/hide
Query:  SNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQGRPDHDHGRGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGR---MKSNPDKRD
        S+++ +      L DE L   +G+  P T+ E + +      GR D D  R      G +E YTPT +   ++L  I   GL K L R   ++ +P+KR+
Subjt:  SNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQGRPDHDHGRGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGR---MKSNPDKRD

Query:  KSQYCLFHRDHGHSTRNC
        K +YC FHRDHG+ T NC
Subjt:  KSQYCLFHRDHGHSTRNC

A0A6J1DYL6 uncharacterized protein LOC1110257851.3e-1235.93Show/hide
Query:  QRTTQASH------QPSNCQ-ATISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVS---------------------RTDDGSQGRPDHDHG-----
        QRTT++ H           Q  ++++  +L+A  +G+ DE L  S GK  P T+ E +S                     RTD   +   D   G     
Subjt:  QRTTQASH------QPSNCQ-ATISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVS---------------------RTDDGSQGRPDHDHG-----

Query:  ---RGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRN
             +  P  KFEKYTPT V  EQVLMEI++  LLK+  RMK    KR K +YCLFHRDH H+T++
Subjt:  ---RGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRN

A0A6J1DZ52 uncharacterized protein LOC1110256121.2e-1339.26Show/hide
Query:  AGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQG-------------RPDHDHGRGRAHPFG-----------------KFEKYTPTVVLQEQVLMEIRNM
        +G++DE L  S GK  P T+ E +SR                    R D    R    P                   KFEKYTPT V  EQVLMEI++ 
Subjt:  AGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQG-------------RPDHDHGRGRAHPFG-----------------KFEKYTPTVVLQEQVLMEIRNM

Query:  GLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC
         LLK+   MK+ P+KR K +YCLFHRDHGH+T +C
Subjt:  GLLKFLGRMKSNPDKRDKSQYCLFHRDHGHSTRNC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACAAGGGACATGACCACACTATTTCGACGTCGAGCATCAGCCGTAGCACAGGCGCAAACTTGAGGAACCTGATTGAAGAAAAATGCAGAATGACCAAAGCTATCGA
GGCTGAGGCCAAAGCTGTCGAGACCAAGACCAGGGCAGCCGAGGCTGTGGCTAGAGCAATCAAGGCAGAGGCTAAGAGTGATGACCCCCCTTGGAAGACTAAGCTTCTGA
ACACCTTGAAGGAGTTTGGAAATTTCCAAAGGGACTTGAACAAATCAAAAGAGGTTGAAAAGGAGATCCATCAGCTTTTTCAAAGAACAAGCCCGAGCATTCCTCTCGCA
GTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAGCAACAATCAGTAATGAAGCAACCCTAGTAGCCATAACAGCAGGGCTAGAGGACGA
GTGGTTGCTTAATTCGATAGGTAAGAGTCAACCTCGAACCTATGTTGAATTTGTTTCCAGGACGGACGATGGTAGCCAAGGCCGACCCGACCATGACCATGGTCGAGGTC
GAGCACATCCCTTTGGTAAGTTTGAGAAATACACGCCAACTGTTGTCCTGCAAGAGCAAGTTCTGATGGAGATCCGAAACATGGGACTTCTTAAATTCCTAGGGAGGATG
AAGTCAAACCCCGATAAAAGAGACAAGAGTCAGTATTGTCTTTTCCACAGAGACCATGGGCATTCAACCAGAAATTGTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTACAAGGGACATGACCACACTATTTCGACGTCGAGCATCAGCCGTAGCACAGGCGCAAACTTGAGGAACCTGATTGAAGAAAAATGCAGAATGACCAAAGCTATCGA
GGCTGAGGCCAAAGCTGTCGAGACCAAGACCAGGGCAGCCGAGGCTGTGGCTAGAGCAATCAAGGCAGAGGCTAAGAGTGATGACCCCCCTTGGAAGACTAAGCTTCTGA
ACACCTTGAAGGAGTTTGGAAATTTCCAAAGGGACTTGAACAAATCAAAAGAGGTTGAAAAGGAGATCCATCAGCTTTTTCAAAGAACAAGCCCGAGCATTCCTCTCGCA
GTTCATGGGAGCCAGAGAACAACGCAAGCCTCACATCAACCTTCTAACTGTCAAGCAACAATCAGTAATGAAGCAACCCTAGTAGCCATAACAGCAGGGCTAGAGGACGA
GTGGTTGCTTAATTCGATAGGTAAGAGTCAACCTCGAACCTATGTTGAATTTGTTTCCAGGACGGACGATGGTAGCCAAGGCCGACCCGACCATGACCATGGTCGAGGTC
GAGCACATCCCTTTGGTAAGTTTGAGAAATACACGCCAACTGTTGTCCTGCAAGAGCAAGTTCTGATGGAGATCCGAAACATGGGACTTCTTAAATTCCTAGGGAGGATG
AAGTCAAACCCCGATAAAAGAGACAAGAGTCAGTATTGTCTTTTCCACAGAGACCATGGGCATTCAACCAGAAATTGTATTTAG
Protein sequenceShow/hide protein sequence
MYKGHDHTISTSSISRSTGANLRNLIEEKCRMTKAIEAEAKAVETKTRAAEAVARAIKAEAKSDDPPWKTKLLNTLKEFGNFQRDLNKSKEVEKEIHQLFQRTSPSIPLA
VHGSQRTTQASHQPSNCQATISNEATLVAITAGLEDEWLLNSIGKSQPRTYVEFVSRTDDGSQGRPDHDHGRGRAHPFGKFEKYTPTVVLQEQVLMEIRNMGLLKFLGRM
KSNPDKRDKSQYCLFHRDHGHSTRNCI