; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018318 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018318
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:22822301..22823062
RNA-Seq ExpressionLag0018318
SyntenyLag0018318
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY61101.1 hypothetical protein CUMW_207140, partial [Citrus unshiu]4.5e-1530.09Show/hide
Query:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGN
        D++ F    WA WN RN W+   KR  P  V  + + ++E    YKR  P+A+ + Q+  +        E F+ +++DAA       + +G V+RD++G 
Subjt:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGN

Query:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLS
        + A+ I       S   AEA  +  GL++A+ + V+ + + SDS  ++  +N  Q   S I   + +I  +K SF  VS  + +R  N  AH+LA+  L 
Subjt:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLS

Query:  SVTPLLWKQHYPEWII
            ++WK  YP  +I
Subjt:  SVTPLLWKQHYPEWII

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]4.4e-1829Show/hide
Query:  WQELADG-QVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDII-----SKGEDFILHSDAAFKGNNQSS
        W  L +  + +DL    +  W IWNDRNS IH + +  V  +C+W+  ++  + +A   +N   + + + R ++     S      L++DAA +G   S+
Subjt:  WQELADG-QVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDII-----SKGEDFILHSDAAFKGNNQSS

Query:  RVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFN
          G ++RD S +L A+  +      SPL AE   +LEGL+ A +S    L + SDSL  IQ +  +          + +I  +   F  +SF   +R+ N
Subjt:  RVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFN

Query:  VFAHNLAREGLSSVT-PLLWKQHYPEWIISL
          AH LA+ G++S +    W  ++P W++ L
Subjt:  VFAHNLAREGLSSVT-PLLWKQHYPEWIISL

XP_024190234.1 uncharacterized protein LOC112194221 [Rosa chinensis]2.2e-1428.57Show/hide
Query:  QDLEYFYVGAWAIWNDRNSWIHKRPIPD----VGMRCDWIIEYMADYKRANPNANV-LIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKS
        +++E F V  W +W  RN + H+  + +    V    +W+  +  D +R+N N      Q    ++          L++DAA     + + +G+V+RD  
Subjt:  QDLEYFYVGAWAIWNDRNSWIHKRPIPD----VGMRCDWIIEYMADYKRANPNANV-LIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKS

Query:  GNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREG
        G LK +      G  S +A EA+ V  GL L R +  Q L + SDS  +I  LN  +   S     + DI  + S+F  V ++ VNR  N+ AH +A+  
Subjt:  GNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREG

Query:  LSSVTPLLWKQHYPEWIISLSLKE
        L +    LW++  P W+  + L E
Subjt:  LSSVTPLLWKQHYPEWIISLSLKE

XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]1.2e-1530.32Show/hide
Query:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDI--ISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKS
        D++ F V  WA WN RN W+   KR  P  V  + + ++E    YKR  P+A+V    +Q +  +      E F+ +++DAA       + +G V+RD++
Subjt:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDI--ISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKS

Query:  GNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREG
        G + A+ I       S   AEA  +  GL++A+ + V+ + + SDS  ++  +N  Q   S I   + +I  +K SF  VS  + +R  N  AH+L +  
Subjt:  GNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREG

Query:  LSSVTPLLWKQHYPEWIISLS
        L     ++WK  YP  +I  S
Subjt:  LSSVTPLLWKQHYPEWIISLS

XP_040960280.1 uncharacterized protein LOC121223215 [Gossypium hirsutum]7.7e-1531.66Show/hide
Query:  GQVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGN
        G  +  + F    WAIWN RN  +H+R I         I  Y+A+ +        L  VE   R    +  D I H DAAF  N   S  G+++RD  G 
Subjt:  GQVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGN

Query:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGL
        L+A +       SSP  AEA   L+ ++L  +  ++ +TI+ DS ++I+         S I   + DI    S F ++ FQF+ +  N  AH LA+E L
Subjt:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGL

TrEMBL top hitse value%identityAlignment
A0A2H5Q972 Uncharacterized protein (Fragment)2.2e-1530.09Show/hide
Query:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGN
        D++ F    WA WN RN W+   KR  P  V  + + ++E    YKR  P+A+ + Q+  +        E F+ +++DAA       + +G V+RD++G 
Subjt:  DLEYFYVGAWAIWNDRNSWIH--KRPIP-DVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGN

Query:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLS
        + A+ I       S   AEA  +  GL++A+ + V+ + + SDS  ++  +N  Q   S I   + +I  +K SF  VS  + +R  N  AH+LA+  L 
Subjt:  LKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLS

Query:  SVTPLLWKQHYPEWII
            ++WK  YP  +I
Subjt:  SVTPLLWKQHYPEWII

A0A5B6UDX5 Reverse transcriptase2.4e-1428.65Show/hide
Query:  FYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVE-QDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQIL
        FY   W +W  RN  +HK+ I         +  YMA+          L ++E ++  ++ SK   F    DAAF   +  S  GLV+ D++G +  +  +
Subjt:  FYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVE-QDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQIL

Query:  CPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGL
              +P  AEA      ++L RS   Q + I  DS ++I+    ++   S I+  + DI ++   F+K+ FQF++R  N  AH +A+E L
Subjt:  CPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGL

A0A5C7IST2 RNase H domain-containing protein7.0e-1428.05Show/hide
Query:  VQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGNL
        ++++  F   AW +WN+RN  + +      G        +++  K      N        I++ I      I ++ DAA         VG+V+RD SG +
Subjt:  VQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFI-LHSDAAFKGNNQSSRVGLVLRDKSGNL

Query:  KASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSS
          S  L   G +S   AEA  + EGL LA SS +Q L+I SDSL++++  NG+    + +   + DI  + S   K S  ++ R  N  AH +AR  +  
Subjt:  KASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSS

Query:  VTPLLWKQHYPEWIISLSLKE
           ++    YP W+  L+L +
Subjt:  VTPLLWKQHYPEWIISLSLKE

A0A6J1DX30 uncharacterized protein LOC1110248742.1e-1829Show/hide
Query:  WQELADG-QVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDII-----SKGEDFILHSDAAFKGNNQSS
        W  L +  + +DL    +  W IWNDRNS IH + +  V  +C+W+  ++  + +A   +N   + + + R ++     S      L++DAA +G   S+
Subjt:  WQELADG-QVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDII-----SKGEDFILHSDAAFKGNNQSS

Query:  RVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFN
          G ++RD S +L A+  +      SPL AE   +LEGL+ A +S    L + SDSL  IQ +  +          + +I  +   F  +SF   +R+ N
Subjt:  RVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFN

Query:  VFAHNLAREGLSSVT-PLLWKQHYPEWIISL
          AH LA+ G++S +    W  ++P W++ L
Subjt:  VFAHNLAREGLSSVT-PLLWKQHYPEWIISL

A0A7J9IIF5 Uncharacterized protein2.7e-1329.02Show/hide
Query:  FYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQILC
        F    W IWN RN  +H+R      +    I  Y+A+ +      +     ++  +    + ED IL  DAAF+ N   S  G++ R++ G +K  +   
Subjt:  FYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQILC

Query:  PLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSS
            SSP  AEA+  L+ ++L  S  ++ +TI  DS ++I+     ++  S I   + DI +    F +VSFQF+ +  N  AH +A+E L++
Subjt:  PLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein5.9e-0522.38Show/hide
Query:  WAIWNDRNSWI--------HKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQ
        W IW  RN+ +         K  +       DW+    +  K  +P   +    E  I            + DA F      +  G ++R+  G   +  
Subjt:  WAIWNDRNSWI--------HKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSRVGLVLRDKSGNLKASQ

Query:  ILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSSVTPL
         +     S+PL AE   +L  L+        ++ +  D  +LI  +NG     S +A  + DI    + F  + F F+ R+ N  AH LA+ G +  T  
Subjt:  ILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGLSSVTPL

Query:  LWKQHYPEWI
              P W+
Subjt:  LWKQHYPEWI

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.0e-0529.13Show/hide
Query:  LHSDAAFKGNNQSSRVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSS
        + +DAA+K   +    G V+R+                  PL AEA+ +   L+ A+S  + KL++ SDS  LI  +  +    +     ++DI ++   
Subjt:  LHSDAAFKGNNQSSRVGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSS

Query:  FIKVSFQFVNRRFNVFAHNLAREGLSS
        F  VSF FV R  N  A  LA+  L S
Subjt:  FIKVSFQFVNRRFNVFAHNLAREGLSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTTGGGCGAAACTCATGTTACTCCAACATCAAAGATAGATGGCAGGAGCTGGCTGATGGTCAGGTGCAGGATCTAGAGTATTTCTATGTGGGTGCATGGGCTAT
TTGGAATGATAGAAATAGTTGGATTCATAAGCGGCCTATCCCGGATGTAGGGATGCGCTGTGATTGGATTATTGAATATATGGCTGATTATAAAAGGGCCAATCCGAATG
CGAATGTTCTCATCCAAGTTGAACAAGATATTCGTGATATCATCTCAAAGGGTGAAGATTTCATATTACATTCTGATGCAGCCTTTAAAGGAAATAACCAATCGAGCAGG
GTTGGTTTAGTACTCCGAGATAAGTCTGGCAATTTAAAAGCATCTCAAATTTTGTGCCCTTTGGGGTGTTCTTCTCCTTTAGCGGCGGAAGCGGTCGGGGTTTTAGAAGG
CTTACGTCTGGCACGGTCTTCGGCAGTGCAGAAATTAACGATCTTATCTGATTCTCTGTCGTTAATACAATATCTAAATGGAGACCAACAGTGTGATTCCAGAATAGCAA
CGACAATGTGGGATATAGGGGATATCAAGAGTTCCTTCATCAAAGTGAGCTTTCAATTTGTTAATCGTCGTTTTAATGTTTTTGCTCATAATTTAGCCCGTGAAGGCCTT
TCTTCTGTAACACCACTCCTGTGGAAACAACATTATCCTGAGTGGATAATTAGTTTATCGCTCAAGGAGCGAAATCTGTTTGTATCCCGAGGGGTTTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTTGGGCGAAACTCATGTTACTCCAACATCAAAGATAGATGGCAGGAGCTGGCTGATGGTCAGGTGCAGGATCTAGAGTATTTCTATGTGGGTGCATGGGCTAT
TTGGAATGATAGAAATAGTTGGATTCATAAGCGGCCTATCCCGGATGTAGGGATGCGCTGTGATTGGATTATTGAATATATGGCTGATTATAAAAGGGCCAATCCGAATG
CGAATGTTCTCATCCAAGTTGAACAAGATATTCGTGATATCATCTCAAAGGGTGAAGATTTCATATTACATTCTGATGCAGCCTTTAAAGGAAATAACCAATCGAGCAGG
GTTGGTTTAGTACTCCGAGATAAGTCTGGCAATTTAAAAGCATCTCAAATTTTGTGCCCTTTGGGGTGTTCTTCTCCTTTAGCGGCGGAAGCGGTCGGGGTTTTAGAAGG
CTTACGTCTGGCACGGTCTTCGGCAGTGCAGAAATTAACGATCTTATCTGATTCTCTGTCGTTAATACAATATCTAAATGGAGACCAACAGTGTGATTCCAGAATAGCAA
CGACAATGTGGGATATAGGGGATATCAAGAGTTCCTTCATCAAAGTGAGCTTTCAATTTGTTAATCGTCGTTTTAATGTTTTTGCTCATAATTTAGCCCGTGAAGGCCTT
TCTTCTGTAACACCACTCCTGTGGAAACAACATTATCCTGAGTGGATAATTAGTTTATCGCTCAAGGAGCGAAATCTGTTTGTATCCCGAGGGGTTTGTTGA
Protein sequenceShow/hide protein sequence
MMVGRNSCYSNIKDRWQELADGQVQDLEYFYVGAWAIWNDRNSWIHKRPIPDVGMRCDWIIEYMADYKRANPNANVLIQVEQDIRDIISKGEDFILHSDAAFKGNNQSSR
VGLVLRDKSGNLKASQILCPLGCSSPLAAEAVGVLEGLRLARSSAVQKLTILSDSLSLIQYLNGDQQCDSRIATTMWDIGDIKSSFIKVSFQFVNRRFNVFAHNLAREGL
SSVTPLLWKQHYPEWIISLSLKERNLFVSRGVC