; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018340 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018340
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr5:23678383..23679165
RNA-Seq ExpressionLag0018340
SyntenyLag0018340
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7947748.1 hypothetical protein I3843_14G109500 [Carya illinoinensis]6.4e-5652.11Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        ++GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI +W ++A+ FL KFFPPAKT +L++EIG F+Q D E LYEAWER K+++R CPQHG PDWLQVQ+F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ
        YNGLN  T+T++D ++G + + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+A+L++ ++ LT+  + +S   VA         
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ

Query:  DV--EEVQYVGNR
        +   E+VQYV NR
Subjt:  DV--EEVQYVGNR

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.9e-6468.13Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        M+GVS DAI+LRLFPFSLQD+AKDWLE++   SI+TW+ LAQAFL K+FPPAK+ +L+TEIGTFRQL++EQLYEAWER K++LR CPQHGYPDWLQ+QLF
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGT--ISKKAGIYELDESSSLKAQMASLTNALNKLTS
        YNGL SSTK++LD +AG S   K   EA  +LE++A TSY WP E  +  I K AG+YE+DE +SLKAQMASLTNAL+KLT+
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGT--ISKKAGIYELDESSSLKAQMASLTNALNKLTS

XP_023874613.1 uncharacterized protein LOC111987139 [Quercus suber]4.5e-5752.58Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++EIG FRQ D E LYEAWER K+++R CPQHG PDWLQVQ+F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ
        YNGLN  T+T++D ++G + + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ LT+  + +    VA         
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ

Query:  DV--EEVQYVGNR
        +   E+VQY+ NR
Subjt:  DV--EEVQYVGNR

XP_023903214.1 uncharacterized protein LOC112015077 [Quercus suber]4.5e-5752.58Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++EIG FRQ D E LYEAWER K+++R CPQHG PDWLQVQ+F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ
        YNGLN  T+T++D ++G + + KT   A  LLEEMA+ +YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ L++  + +S   VA         
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ

Query:  DV--EEVQYVGNR
        +   E+VQY+ NR
Subjt:  DV--EEVQYVGNR

XP_023929660.1 uncharacterized protein LOC112040975 [Quercus suber]1.7e-5652.58Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        M+GV+ D IRLRLFPFSL+DKA+ WL+S++ GSI++W ++A+ FL KFFPPAKT +L++EIG FRQ D E LYEAWER K+++R CPQHG  DWLQVQ+F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ
        YNGLN  T+T++D ++G + + KT   A  LLEEMA+  YQWPTE     K AGI+EL+  ++L AQ+ASL++ ++ LT+  + +S+  VA         
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ

Query:  DV--EEVQYVGNR
        +   E VQY+ NR
Subjt:  DV--EEVQYVGNR

TrEMBL top hitse value%identityAlignment
A0A2I4G4Q3 uncharacterized protein LOC1090047121.6e-5249.3Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        ++GV+ D IRLRLFPFSL+D+A+ WL+S++  SI++W ++A+ F  KFFPPAKTT+L++EIG F+Q D E LYEAWE  K+++R CPQHG PDWLQVQ+F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ
        YNGLN  T+T++D ++G + + KT+  A  LLEEMA+ +YQWP E     K A I+EL+  ++L AQ+A+L++ ++ LT+  + +S   V          
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQ

Query:  DV--EEVQYVGNR
        +V  E+VQY+ NR
Subjt:  DV--EEVQYVGNR

A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129455.5e-5352.8Show/hide
Query:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY
        +GV+ DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFPPAKT K++ +I +F Q D E LYEAWER KE+LR CP HG PDWLQVQ FY
Subjt:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY

Query:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQD
        NGL  S KT++D +AG + + K   +A +LLEEMA+ +YQWP+E     K  G YE+D   +L  Q+A+L+  L+ L    V  S+  V E        D
Subjt:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQD

Query:  -----VEEVQYVGN
              E VQ+VGN
Subjt:  -----VEEVQYVGN

A0A6J0ZYV0 uncharacterized protein LOC1104134135.5e-5352.8Show/hide
Query:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY
        +GV+ DAIRLRLFPFSL+DKAK WL S+  GSI+TW++LAQ FL KFFPPAKT K++ +I +F Q D E LYEAWER KE+LR CP HG PDWLQVQ FY
Subjt:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY

Query:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQD
        NGL  S KT++D +AG + + K   +A +LLEEMA+ +YQWP+E     K  G YE+D   +L  Q+A+L+  L+ L    V  S+  V E        D
Subjt:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQD

Query:  -----VEEVQYVGN
              E VQ+VGN
Subjt:  -----VEEVQYVGN

A0A6P6XAQ1 Reverse transcriptase2.4e-4849.53Show/hide
Query:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY
        +GVS DAI+LRLFPFSL+DKAK WL+S    + +TWDELA+AFL KFFPP KT KL+ +I +F Q + E LYEAWER +E+ R CP HG PDWL VQ FY
Subjt:  DGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFY

Query:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSE-----VVKSISTVAEGYSK
        NGL   TKT +D +AG + + KT  EA+ L+EEMAA +YQW  E G   + AG+ E+D  + L A+M ++   LN+   S      VV S +     +  
Subjt:  NGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSE-----VVKSISTVAEGYSK

Query:  KEGQDVEEVQYVGN
              E+VQY+ N
Subjt:  KEGQDVEEVQYVGN

A0A803PT47 Uncharacterized protein4.7e-5249.28Show/hide
Query:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF
        M+GV+ DAIRLRLFP SL+D+ + WL+S++  SISTWDE+A+ F+ KFFPP+K+ +L++EIG FR LD E  YEAWERSK++LR  PQHGY  W+QV +F
Subjt:  MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLF

Query:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSI-STVAEGYSKKEG
        YNGLN  T+T++D + G + L K +TEA +LLEEMA  SY WP E  T  K AG++E+D  +++ AQ+++L+N    L + +   ++ + VA   S+   
Subjt:  YNGLNSSTKTVLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSI-STVAEGYSKKEG

Query:  QDVEEVQYV
          +E+ QY+
Subjt:  QDVEEVQYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATGGAGTTTCGGCAGACGCTATAAGATTGAGGTTATTCCCATTTTCTCTGCAAGACAAGGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGTATTAGCACATG
GGACGAGCTTGCCCAGGCTTTCCTGACAAAATTTTTCCCGCCTGCCAAGACCACGAAGCTCCAGACTGAGATCGGAACATTTAGGCAGCTTGATGAGGAGCAGTTGTACG
AGGCATGGGAGAGATCTAAGGAAATGCTTAGGTGGTGCCCCCAGCATGGATATCCAGATTGGCTCCAGGTGCAGTTGTTTTATAATGGATTGAATTCCTCCACCAAGACC
GTTTTAGACACATCAGCAGGTGATAGTTTTCTTTTCAAAACAGTGACGGAAGCCAAGGATCTGCTAGAGGAAATGGCAGCAACCAGTTATCAGTGGCCGACCGAGATGGG
GACGATTTCCAAGAAGGCTGGAATTTATGAATTAGATGAGTCAAGTTCGTTGAAGGCACAGATGGCATCTTTGACAAATGCCCTAAACAAGCTGACTTCATCTGAGGTGG
TCAAGTCCATTTCCACCGTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTGGGAAACAGACCATTGACTAAGGTGGAAATGGACTTG
ACCATCTCAGATGAAGTCAACTTGTTCAGCGCATTGGTCAGAGATGCCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATGGAGTTTCGGCAGACGCTATAAGATTGAGGTTATTCCCATTTTCTCTGCAAGACAAGGCAAAGGATTGGCTCGAATCAGTCGAGACGGGCAGTATTAGCACATG
GGACGAGCTTGCCCAGGCTTTCCTGACAAAATTTTTCCCGCCTGCCAAGACCACGAAGCTCCAGACTGAGATCGGAACATTTAGGCAGCTTGATGAGGAGCAGTTGTACG
AGGCATGGGAGAGATCTAAGGAAATGCTTAGGTGGTGCCCCCAGCATGGATATCCAGATTGGCTCCAGGTGCAGTTGTTTTATAATGGATTGAATTCCTCCACCAAGACC
GTTTTAGACACATCAGCAGGTGATAGTTTTCTTTTCAAAACAGTGACGGAAGCCAAGGATCTGCTAGAGGAAATGGCAGCAACCAGTTATCAGTGGCCGACCGAGATGGG
GACGATTTCCAAGAAGGCTGGAATTTATGAATTAGATGAGTCAAGTTCGTTGAAGGCACAGATGGCATCTTTGACAAATGCCCTAAACAAGCTGACTTCATCTGAGGTGG
TCAAGTCCATTTCCACCGTAGCTGAAGGTTATTCAAAGAAGGAAGGTCAAGATGTGGAAGAAGTCCAGTACGTGGGAAACAGACCATTGACTAAGGTGGAAATGGACTTG
ACCATCTCAGATGAAGTCAACTTGTTCAGCGCATTGGTCAGAGATGCCATCTGA
Protein sequenceShow/hide protein sequence
MDGVSADAIRLRLFPFSLQDKAKDWLESVETGSISTWDELAQAFLTKFFPPAKTTKLQTEIGTFRQLDEEQLYEAWERSKEMLRWCPQHGYPDWLQVQLFYNGLNSSTKT
VLDTSAGDSFLFKTVTEAKDLLEEMAATSYQWPTEMGTISKKAGIYELDESSSLKAQMASLTNALNKLTSSEVVKSISTVAEGYSKKEGQDVEEVQYVGNRPLTKVEMDL
TISDEVNLFSALVRDAI