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Lag0018343 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018343
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr5:23748503..23748895
RNA-Seq ExpressionLag0018343
SyntenyLag0018343
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042177.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-1046Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL
        SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL

KAA0053192.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-0944.09Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHL
        SQ+K  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K + EE +DF    + VTLA++FP  FL D Q ++L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHL

KAA0059012.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-0945.65Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH
        SQEK  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K V EE +D   P   VTLA++FP  FL D Q ++
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-0945.65Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH
        SQEK   +E++++GWT+V RRKK+K +  +KESRL+ N +R  K+Q+ K K+K+R+ K V E+ +DF    + VTLA++FP  FL D Q ++
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH

TYK26751.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-1046Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL
        SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL

TrEMBL top hitse value%identityAlignment
A0A5A7TKA6 Retrotransposon gag protein2.4e-1046Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL
        SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL

A0A5A7UBT4 Retrotransposon gag protein7.0e-1044.09Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHL
        SQ+K  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K + EE +DF    + VTLA++FP  FL D Q ++L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHL

A0A5A7USZ1 Retrotransposon gag protein5.4e-1045.65Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH
        SQEK  S+E++++GW +V RRKK+K +  +KESR ++N +R  K+Q+ K K+K+R+ K V EE +D   P   VTLA++FP  FL D Q ++
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH

A0A5D3BY54 Ty3-gypsy retrotransposon protein7.0e-1045.65Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH
        SQEK   +E++++GWT+V RRKK+K +  +KESRL+ N +R  K+Q+ K K+K+R+ K V E+ +DF    + VTLA++FP  FL D Q ++
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKH

A0A5D3DSL4 Retrotransposon gag protein2.4e-1046Show/hide
Query:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL
        SQEK  S+E++++GWT+V RRKK+K +   KESR ++N  R  K+Q+ K K+K+R+ K V E  +DF    + VTLAE+FP  FL D Q ++ +  HV L
Subjt:  SQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCGTCGAAGATGAGAATGACGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCG
CCTATTTCAAAACAGTAAAAGAAAGGTCAAATCTCAAAGGAAGAAGGGAAAAGAGAAGTCAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTCTGCCCTC
CACAACCCGTAACTTTGGCAGAATACTTCCCAAGGCACTTTCTCGATGATAGTCAAGGAAAGCACTTGAAATCGTCACATGTCACATTGTGGACGTGGCGGAAGATGATG
ATTTTCCTACTAGTTCCTCGGGAGTGGTGGCAGGTTCATGAGACTTATCCTCCTTCAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCGTCGAAGATGAGAATGACGGTTGGACCCTTGTCGTTCGTCGCAAAAAGCAAAAGCAAAGTTACGCACGAAAAGAGTCCCG
CCTATTTCAAAACAGTAAAAGAAAGGTCAAATCTCAAAGGAAGAAGGGAAAAGAGAAGTCAAGGAGGTCAAAACCTGTCGTGGAGGAAAGTGAAGATTTCTTCTGCCCTC
CACAACCCGTAACTTTGGCAGAATACTTCCCAAGGCACTTTCTCGATGATAGTCAAGGAAAGCACTTGAAATCGTCACATGTCACATTGTGGACGTGGCGGAAGATGATG
ATTTTCCTACTAGTTCCTCGGGAGTGGTGGCAGGTTCATGAGACTTATCCTCCTTCAGCATAA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSVEDENDGWTLVVRRKKQKQSYARKESRLFQNSKRKVKSQRKKGKEKSRRSKPVVEESEDFFCPPQPVTLAEYFPRHFLDDSQGKHLKSSHVTLWTWRKMM
IFLLVPREWWQVHETYPPSA