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Lag0018362 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018362
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:24436905..24437288
RNA-Seq ExpressionLag0018362
SyntenyLag0018362
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3458060.1 reverse transcriptase [Gossypium australe]5.4e-2546.22Show/hide
Query:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HID  +EE+N   KWR TGFYG P    +   W+LL  L  G+N+PW++ GD NE+L   EK GG  + ++ +++FR+A++   L D+GF   
Subjt:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         +TW RG+ AS  IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

KAA3461195.1 reverse transcriptase [Gossypium australe]1.1e-2546.22Show/hide
Query:  IKSYSNGHIDGTIEED--NQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KS+S  HI+  IEE+  ++KW+FTGFY +P   +K ++W LL RLS+ +N PW++ GD NE++ G EK GG+Q++ K +++FRE ++  +L+D+G+   
Subjt:  IKSYSNGHIDGTIEED--NQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         FTW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

KAA3466354.1 reverse transcriptase [Gossypium australe]6.3e-2649.58Show/hide
Query:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HID  I E N K  WRFTGFYG+P    K+  W LL+ LS GN  PW++ GD NE+L G+EK GG  ++Q  +D FR+ +++ +L D+G+   
Subjt:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         FTW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

KAA3467408.1 reverse transcriptase [Gossypium australe]5.4e-2544.54Show/hide
Query:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HI+  +EE++  + WRFTGFYG P    +  SW+LL  L  GNN+PW++ GD NE++   EK GG  + ++ +D+FR+ +D   L D+GF  +
Subjt:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         +TW RG+  S  IRERL+
Subjt:  KFTWRRGKKASTAIRERLD

KAA3485417.1 reverse transcriptase [Gossypium australe]2.4e-2544.54Show/hide
Query:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        ++SYS  HID  + E +  ++WRFTGFYG+P + +++  W LL+RLS+GN+ PW++ GD NE+L   EK+GG  + QK +++FR+ +++ +L D+G+   
Subjt:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
        ++TW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

TrEMBL top hitse value%identityAlignment
A0A5B6UZQ1 Reverse transcriptase5.2e-2646.22Show/hide
Query:  IKSYSNGHIDGTIEED--NQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KS+S  HI+  IEE+  ++KW+FTGFY +P   +K ++W LL RLS+ +N PW++ GD NE++ G EK GG+Q++ K +++FRE ++  +L+D+G+   
Subjt:  IKSYSNGHIDGTIEED--NQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         FTW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

A0A5B6VBB6 Reverse transcriptase3.1e-2649.58Show/hide
Query:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HID  I E N K  WRFTGFYG+P    K+  W LL+ LS GN  PW++ GD NE+L G+EK GG  ++Q  +D FR+ +++ +L D+G+   
Subjt:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         FTW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

A0A5B6VE04 Reverse transcriptase2.6e-2544.54Show/hide
Query:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HI+  +EE++  + WRFTGFYG P    +  SW+LL  L  GNN+PW++ GD NE++   EK GG  + ++ +D+FR+ +D   L D+GF  +
Subjt:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         +TW RG+  S  IRERL+
Subjt:  KFTWRRGKKASTAIRERLD

A0A5B6VEN5 Reverse transcriptase2.6e-2548.74Show/hide
Query:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        +KSYS  HID  I E N K  WRFTGFY +P    K+  W LL+ LS GN  PW++ GD NE+L G+EK GG  ++Q  +D+FR+ +++ +L D+G+   
Subjt:  IKSYSNGHIDGTIEEDNQK--WRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
         FTW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

A0A5B6WXI9 Reverse transcriptase1.2e-2544.54Show/hide
Query:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN
        ++SYS  HID  + E +  ++WRFTGFYG+P + +++  W LL+RLS+GN+ PW++ GD NE+L   EK+GG  + QK +++FR+ +++ +L D+G+   
Subjt:  IKSYSNGHIDGTIEEDN--QKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICN

Query:  KFTWRRGKKASTAIRERLD
        ++TW RG    T IRERLD
Subjt:  KFTWRRGKKASTAIRERLD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCATATTGAAAAATACGGGCTGTTACATAAAGTCTTATTCGAATGGCCATATTGACGGTACTATAGAAGAAGACAACCAGAAATGGAGATTCACAGGTTTTTACGG
GAATCCGGAAGCGAGTAAAAAACATGTGTCCTGGAAGCTGCTAGAAAGACTTAGCGAAGGTAACAATATCCCCTGGATTATAAGAGGAGATTTAAATGAATTACTCTTGG
GTGATGAAAAAGCTGGGGGTTCTCAAAAAAACCAAAAGATGATCGATAGTTTTAGAGAAGCTATTGATAAATATAGGCTTAGAGATGTGGGGTTTATCTGCAACAAATTC
ACTTGGAGAAGGGGAAAGAAAGCTTCCACTGCCATTAGGGAGAGGCTCGACTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCATATTGAAAAATACGGGCTGTTACATAAAGTCTTATTCGAATGGCCATATTGACGGTACTATAGAAGAAGACAACCAGAAATGGAGATTCACAGGTTTTTACGG
GAATCCGGAAGCGAGTAAAAAACATGTGTCCTGGAAGCTGCTAGAAAGACTTAGCGAAGGTAACAATATCCCCTGGATTATAAGAGGAGATTTAAATGAATTACTCTTGG
GTGATGAAAAAGCTGGGGGTTCTCAAAAAAACCAAAAGATGATCGATAGTTTTAGAGAAGCTATTGATAAATATAGGCTTAGAGATGTGGGGTTTATCTGCAACAAATTC
ACTTGGAGAAGGGGAAAGAAAGCTTCCACTGCCATTAGGGAGAGGCTCGACTGA
Protein sequenceShow/hide protein sequence
MIILKNTGCYIKSYSNGHIDGTIEEDNQKWRFTGFYGNPEASKKHVSWKLLERLSEGNNIPWIIRGDLNELLLGDEKAGGSQKNQKMIDSFREAIDKYRLRDVGFICNKF
TWRRGKKASTAIRERLD