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Lag0018387 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018387
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSUPPRESSOR OF ABI3-5
Genome locationchr5:25452785..25455276
RNA-Seq ExpressionLag0018387
SyntenyLag0018387
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046226.1 RNA-binding protein 5-B isoform X2 [Cucumis melo var. makuwa]1.8e-2084.06Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGS PSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
XP_011655136.1 SUPPRESSOR OF ABI3-5 isoform X1 [Cucumis sativus]3.7e-2185.51Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
XP_031741241.1 SUPPRESSOR OF ABI3-5 isoform X2 [Cucumis sativus]3.7e-2185.51Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
XP_031741242.1 SUPPRESSOR OF ABI3-5 isoform X3 [Cucumis sativus]3.7e-2185.51Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
XP_038876047.1 LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 [Benincasa hispida]3.7e-2185.51Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
TrEMBL top hitse value%identityAlignment
A0A0A0KR81 Uncharacterized protein1.8e-2185.51Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
A0A1S4E414 SUPPRESSOR OF ABI3-58.9e-2184.06Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGS PSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
A0A5D3D622 RNA-binding protein 5-B isoform X28.9e-2184.06Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILGPGS PSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
A0A6J1GW06 SUPPRESSOR OF ABI3-5 isoform X11.5e-2084.06Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILG GSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
A0A6J1JH15 SUPPRESSOR OF ABI3-5 isoform X11.5e-2084.06Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ H VEDA+KALDATNGTTLE NGQILRVAYAKSILG GSGPSGSSQSSSLAAA IEA TFAQQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
SwissProt top hitse value%identityAlignment
F4JCU0 SUPPRESSOR OF ABI3-51.2e-1462.32Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ + VEDA+KAL+ATN T LE NG+ILRVAYAKS+ G G+G S  S S++LAAA IEA TF+QQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
Arabidopsis top hitse value%identityAlignment
AT3G54230.1 suppressor of abi3-58.5e-1662.32Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ + VEDA+KAL+ATN T LE NG+ILRVAYAKS+ G G+G S  S S++LAAA IEA TF+QQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
AT3G54230.2 suppressor of abi3-58.5e-1662.32Show/hide
Query:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ
        G   V+ + VEDA+KAL+ATN T LE NG+ILRVAYAKS+ G G+G S  S S++LAAA IEA TF+QQ
Subjt:  GVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATTTAGGAGTTCGATACGACAAGAACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGTGGAGGATGCTAGCAAAGCTCTTGATGCCACAAATGG
CACAACCCTCGAGAATAATGGACAAATTTTACGAGTAGCATATGCTAAGAGCATTCTTGGTCCAGGATCAGGACCATCTGGATCTTCACAGTCTAGCAGCCTTGCAGCTG
CTACAATTGAGGCTACAACGTTTGCCCAGCAGGAACACATTAATTCTCTACTTCGTATAGACCTGCTTTTAGGTGTAAGTTCTGCTGGAGTGAACCCTATCTATCTTTAT
TTAACGGGAAATGGAGGTGTTGTGAAGACAATTGTAAGGCCTACCAAAGTAAATGTTGATGCTCCGAAGTTGGTCATCAACCTTCTCTCTTCTTACAAGGTACCAGTTAA
GCTATGTATTTTGTTGATCTTCTATTCATCAGTTGTCATCCACTGCTTCTATGGGATATGGTTTACTATTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATTTAGGAGTTCGATACGACAAGAACCGTGGTGGTGTTGGTGTGTGTTTGGTTTATGCTCATCAGGTGGAGGATGCTAGCAAAGCTCTTGATGCCACAAATGG
CACAACCCTCGAGAATAATGGACAAATTTTACGAGTAGCATATGCTAAGAGCATTCTTGGTCCAGGATCAGGACCATCTGGATCTTCACAGTCTAGCAGCCTTGCAGCTG
CTACAATTGAGGCTACAACGTTTGCCCAGCAGGAACACATTAATTCTCTACTTCGTATAGACCTGCTTTTAGGTGTAAGTTCTGCTGGAGTGAACCCTATCTATCTTTAT
TTAACGGGAAATGGAGGTGTTGTGAAGACAATTGTAAGGCCTACCAAAGTAAATGTTGATGCTCCGAAGTTGGTCATCAACCTTCTCTCTTCTTACAAGGTACCAGTTAA
GCTATGTATTTTGTTGATCTTCTATTCATCAGTTGTCATCCACTGCTTCTATGGGATATGGTTTACTATTTTCTGA
Protein sequenceShow/hide protein sequence
MRNLGVRYDKNRGGVGVCLVYAHQVEDASKALDATNGTTLENNGQILRVAYAKSILGPGSGPSGSSQSSSLAAATIEATTFAQQEHINSLLRIDLLLGVSSAGVNPIYLY
LTGNGGVVKTIVRPTKVNVDAPKLVINLLSSYKVPVKLCILLIFYSSVVIHCFYGIWFTIF