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Lag0018423 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018423
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:26516641..26516943
RNA-Seq ExpressionLag0018423
SyntenyLag0018423
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022149380.1 uncharacterized protein LOC111017810 [Momordica charantia]3.4e-0645.33Show/hide
Query:  SSSRVKRKPPPVMENQPQKVQRHQPERQ-APIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        SSS VKRK      +Q  +  +H  +RQ AP  P+C  C K HVG C  G+++CFKC K GH+A+ CP  G   Q
Subjt:  SSSRVKRKPPPVMENQPQKVQRHQPERQ-APIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

XP_022155000.1 uncharacterized protein LOC111022144 [Momordica charantia]1.5e-0638.89Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        MDK V+ K        SSS VKRK  P   +   +  +HQ + +  + P+C  C K H GQC TG K CF+CG+  H+A+ CP      Q
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

XP_022155872.1 uncharacterized protein LOC111022885 [Momordica charantia]1.5e-0642.68Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC
        MDK V+ +VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K + GQC TG   CF+C + GH+A+ C
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC

XP_022156326.1 uncharacterized protein LOC111023247 [Momordica charantia]6.1e-0841.11Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        MDK V+ K  P     SSS VKRK P    +   +  + Q + Q  + P+C  C K H GQC TG K CF+CG+ GH+A+ CP      Q
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

XP_022159077.1 uncharacterized protein LOC111025517 [Momordica charantia]4.0e-0742.68Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC
        MD  V+  VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K   GQC TG + CF+CG+ GH+A+ C
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC

TrEMBL top hitse value%identityAlignment
A0A6J1D5J7 uncharacterized protein LOC1110178101.6e-0645.33Show/hide
Query:  SSSRVKRKPPPVMENQPQKVQRHQPERQ-APIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        SSS VKRK      +Q  +  +H  +RQ AP  P+C  C K HVG C  G+++CFKC K GH+A+ CP  G   Q
Subjt:  SSSRVKRKPPPVMENQPQKVQRHQPERQ-APIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

A0A6J1DL73 uncharacterized protein LOC1110221447.3e-0738.89Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        MDK V+ K        SSS VKRK  P   +   +  +HQ + +  + P+C  C K H GQC TG K CF+CG+  H+A+ CP      Q
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

A0A6J1DQJ4 uncharacterized protein LOC1110228857.3e-0742.68Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC
        MDK V+ +VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K + GQC TG   CF+C + GH+A+ C
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC

A0A6J1DUM2 uncharacterized protein LOC1110232473.0e-0841.11Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ
        MDK V+ K  P     SSS VKRK P    +   +  + Q + Q  + P+C  C K H GQC TG K CF+CG+ GH+A+ CP      Q
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQ

A0A6J1DYU5 uncharacterized protein LOC1110255171.9e-0742.68Show/hide
Query:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC
        MD  V+  VQP     SSS VKRK  P   +QP +  + +P +Q  + P+C  C K   GQC TG + CF+CG+ GH+A+ C
Subjt:  MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAAAGGTGGCAAGGAAGGTGCAGCCCCGTGGGGGAGAACCTTCTTCGTCAAGAGTTAAGAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTTCA
ACGACATCAACCTGAGAGGCAGGCTCCTATTATACCCCTGTGCAACGTGTGCAACAAACACCACGTGGGTCAATGTGACACGGGTGAAAAAGTCTGTTTCAAGTGTGGAA
AGGTAGGTCACTATGCGAAGTGGTGTCCCACCAAAGGCGAGCCTAATCAAGAGAAGCCAGTTTTGAGAGCCCCTCAGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAAAGGTGGCAAGGAAGGTGCAGCCCCGTGGGGGAGAACCTTCTTCGTCAAGAGTTAAGAGGAAACCTCCCCCAGTAATGGAGAATCAACCGCAGAAAGTTCA
ACGACATCAACCTGAGAGGCAGGCTCCTATTATACCCCTGTGCAACGTGTGCAACAAACACCACGTGGGTCAATGTGACACGGGTGAAAAAGTCTGTTTCAAGTGTGGAA
AGGTAGGTCACTATGCGAAGTGGTGTCCCACCAAAGGCGAGCCTAATCAAGAGAAGCCAGTTTTGAGAGCCCCTCAGTTTTGA
Protein sequenceShow/hide protein sequence
MDKKVARKVQPRGGEPSSSRVKRKPPPVMENQPQKVQRHQPERQAPIIPLCNVCNKHHVGQCDTGEKVCFKCGKVGHYAKWCPTKGEPNQEKPVLRAPQF