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Lag0018430 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018430
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr5:26928701..26929069
RNA-Seq ExpressionLag0018430
SyntenyLag0018430
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034812.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-0449.15Show/hide
Query:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        P  ++++VM+T+  T E+RM E+++ +N LMKA+EE+D +IA LK+ IEN+  AESS T
Subjt:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

KAA0061094.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0449.15Show/hide
Query:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        P  +++ VM+T+  T E+RMTE+++ +N LMKA+EE+D +IA LK+ IE++  AESS T
Subjt:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

KAA0066644.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-0433.83Show/hide
Query:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH
        S K +S  S  + SY G +          ++   S++  +    L        ++K NPLF            E + +VV+VMM +  T E  M EM+  
Subjt:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH

Query:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        IN LMK IEE+D +IA LK QI+    AESS+T
Subjt:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

TYK04088.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-0433.83Show/hide
Query:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH
        S K +S  S ++ SY G +          ++   S++  +    L        ++K NPLF            E + +VV+VMM +  T E  M EM+  
Subjt:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH

Query:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        IN LMK IEE+D +IA LK QI+    AESS+T
Subjt:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-0447.46Show/hide
Query:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        P+ ++++VM+T+  T E RM E+++ +N LMKA+EE+D +IA LK+ IE+   AESS T
Subjt:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

TrEMBL top hitse value%identityAlignment
A0A5A7SUF0 Ty3-gypsy retrotransposon protein1.1e-0449.15Show/hide
Query:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        P  ++++VM+T+  T E+RM E+++ +N LMKA+EE+D +IA LK+ IEN+  AESS T
Subjt:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

A0A5A7U601 Ty3-gypsy retrotransposon protein1.4e-0445.31Show/hide
Query:  NPLFEPNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        +PL  P+ ++++VM+TE  T E+RMT++++ IN L+K +EE+D +IA LK+ IE++   ESS T
Subjt:  NPLFEPNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

A0A5A7V192 Ty3-gypsy retrotransposon protein1.4e-0449.15Show/hide
Query:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        P  +++ VM+T+  T E+RMTE+++ +N LMKA+EE+D +IA LK+ IE++  AESS T
Subjt:  PNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

A0A5A7VH30 Ty3-gypsy retrotransposon protein1.1e-0433.83Show/hide
Query:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH
        S K +S  S  + SY G +          ++   S++  +    L        ++K NPLF            E + +VV+VMM +  T E  M EM+  
Subjt:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH

Query:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        IN LMK IEE+D +IA LK QI+    AESS+T
Subjt:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

A0A5D3BYI9 Ty3-gypsy retrotransposon protein6.4e-0533.83Show/hide
Query:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH
        S K +S  S ++ SY G +          ++   S++  +    L        ++K NPLF            E + +VV+VMM +  T E  M EM+  
Subjt:  SFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLF------------EPNFDVVTVMMTETRTMEERMTEMQEH

Query:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT
        IN LMK IEE+D +IA LK QI+    AESS+T
Subjt:  INTLMKAIEEKDSQIAQLKSQIENQHIAESSQT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAAGACTTCTTCAATGGTCTCTGTCATGAACAAGTCTTACATCGGTTTTATTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAACATACAACTTCTAT
CGTTGTAGGCCAAGAAACAACCTTGTTGGGGGCTTATACTAATGACAAGTTTCTTGTTAAGTACAACCCTTTGTTTGAACCTAATTTTGACGTAGTGACTGTCATGATGA
CTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGTCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAAGACTTCTTCAATGGTCTCTGTCATGAACAAGTCTTACATCGGTTTTATTGCCCATTGTTGCTTCAATGAACTGACGTTGCAAGAACATACAACTTCTAT
CGTTGTAGGCCAAGAAACAACCTTGTTGGGGGCTTATACTAATGACAAGTTTCTTGTTAAGTACAACCCTTTGTTTGAACCTAATTTTGACGTAGTGACTGTCATGATGA
CTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATGCAGGAACACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATCGCGCAACTAAAGAGTCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACCTAA
Protein sequenceShow/hide protein sequence
MSFKTSSMVSVMNKSYIGFIAHCCFNELTLQEHTTSIVVGQETTLLGAYTNDKFLVKYNPLFEPNFDVVTVMMTETRTMEERMTEMQEHINTLMKAIEEKDSQIAQLKSQ
IENQHIAESSQT