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Lag0018436 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018436
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr5:27018893..27019400
RNA-Seq ExpressionLag0018436
SyntenyLag0018436
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK07957.1 hypothetical protein E5676_scaffold265G00780 [Cucumis melo var. makuwa]3.3e-2342.75Show/hide
Query:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV
        +V+P+   ++QV +G  Q+ V L  + CSCR+WD+ EI C+HA VVL   ++    Y S FY  +TLS  Y+G I P+G    W + + V  +KILP   
Subjt:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV

Query:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK
        KR AGRP K +IPS  EF    KC  C R  +N ++CK
Subjt:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK

XP_022155207.1 uncharacterized protein LOC111022347 [Momordica charantia]2.6e-2850.72Show/hide
Query:  DNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVKRSAG
        +++ FQ+   T   +  L+ +  +CR   +  ++       +  KH+  K Y S++Y +  LSS YSG IHPLGH+SSW IPE+VK IK+L  NVKR AG
Subjt:  DNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVKRSAG

Query:  RPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKFSLTQ
        RPKK++IPS +EFK+RVKC RCGR  +NRKSCKFSLTQ
Subjt:  RPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKFSLTQ

XP_030483642.1 uncharacterized protein LOC115700217 [Cannabis sativa]4.4e-2343.48Show/hide
Query:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV
        +V   + + ++V D TS Y V+L  K C+C+ +D  E+ CSHA  VL  ++ S  KY S +Y  +   S Y   I PLG  +SW IPE+VKNI + P   
Subjt:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV

Query:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK
        KR AGRPKK +    M+ K +VKCG+C +  +NR+SCK
Subjt:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK

XP_030497480.1 uncharacterized protein LOC115713133 [Cannabis sativa]4.4e-2343.48Show/hide
Query:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV
        +V   + + ++V D TS Y V+L  K C+C+ +D  E+ CSHA  VL  ++ S  KY S +Y  +   S Y   I PLG  +SW IPE+VKNI + P   
Subjt:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV

Query:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK
        KR AGRPKK +    M+ K +VKCG+C +  +NR+SCK
Subjt:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK

XP_038904248.1 uncharacterized protein LOC120090597 [Benincasa hispida]6.1e-2545.39Show/hide
Query:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK
        V+P+DN+Q+ V+DG  Q+ V L    CSCR+WD  EISCSHA V+L   ++ I  Y SN+Y S TLS  Y G + P+G  S+W + ++  +I+ LP   K
Subjt:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK

Query:  RSAGRPKKIKIPSQMEFK-RRVKCGRCGRSEYNRKSCKFSL
        RSAG PKK +IPS+ E K   ++C RC    +N ++CK  L
Subjt:  RSAGRPKKIKIPSQMEFK-RRVKCGRCGRSEYNRKSCKFSL

TrEMBL top hitse value%identityAlignment
A0A2P5CAJ9 Zinc finger, PMZ-type2.8e-2339.57Show/hide
Query:  MQVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLN
        M+V     + F+ I+GT+ ++V+L  K CSC  + + E+ CSHA  V   KH+S   Y S +Y  +T+ + Y G +HP+G+   W IP  +  IK+    
Subjt:  MQVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLN

Query:  VKRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK
         KR AGRPKK +IPS  E K + +CGRC    +NR +C+
Subjt:  VKRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK

A0A5D3BVP4 SWIM-type domain-containing protein3.0e-2239.86Show/hide
Query:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK
        VNPV  ++FQV+DG   + V L    CSC  WD+ EI C+HA +V+ + +++   + S +Y +  LS+ Y GL+ P+G+ + W + E   N  ILP   +
Subjt:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK

Query:  RSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKF
        R AGRP+K +IPS  E  +  KC RC R  +N ++C+F
Subjt:  RSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKF

A0A5D3C7L7 Uncharacterized protein1.6e-2342.75Show/hide
Query:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV
        +V+P+   ++QV +G  Q+ V L  + CSCR+WD+ EI C+HA VVL   ++    Y S FY  +TLS  Y+G I P+G    W + + V  +KILP   
Subjt:  QVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNV

Query:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK
        KR AGRP K +IPS  EF    KC  C R  +N ++CK
Subjt:  KRSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCK

A0A5D3CZ48 SWIM-type domain-containing protein3.0e-2240.58Show/hide
Query:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK
        VNPV  ++FQV+DG   + V L    C+C  WD+ EI C+HA +V+ + +++   + S +Y +  LS  Y GL+  +G+ + W +  EVKN  ILPL  +
Subjt:  VNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVK

Query:  RSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKF
        R AGRP+K +IPS  E  + +KC RC R+ +N ++C+F
Subjt:  RSAGRPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKF

A0A6J1DNQ8 uncharacterized protein LOC1110223471.3e-2850.72Show/hide
Query:  DNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVKRSAG
        +++ FQ+   T   +  L+ +  +CR   +  ++       +  KH+  K Y S++Y +  LSS YSG IHPLGH+SSW IPE+VK IK+L  NVKR AG
Subjt:  DNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVKRSAG

Query:  RPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKFSLTQ
        RPKK++IPS +EFK+RVKC RCGR  +NRKSCKFSLTQ
Subjt:  RPKKIKIPSQMEFKRRVKCGRCGRSEYNRKSCKFSLTQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGGTAAACCCAGTTGACAATATGCAATTTCAAGTGATCGATGGGACGAGTCAATATGATGTTCACTTAACAACCAAGAGGTGTAGTTGTCGGATGTGGGACATTTT
GGAAATTTCGTGTTCTCATGCATGCGTTGTGTTGACGACTAAACACGTATCCATCAAGAAGTATACATCAAACTTCTACCTTAGCAAGACTCTATCTTCTATATACAGTG
GCTTAATTCATCCATTAGGACATGAGTCTAGCTGGATTATTCCCGAAGAGGTAAAGAACATCAAAATTTTGCCCCTCAATGTGAAGCGTTCTGCTGGAAGGCCGAAGAAG
ATCAAGATCCCTTCCCAAATGGAATTCAAGAGGCGTGTGAAATGTGGTCGTTGTGGACGATCTGAGTACAATCGAAAATCTTGCAAATTTTCCCTCACCCAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGGTAAACCCAGTTGACAATATGCAATTTCAAGTGATCGATGGGACGAGTCAATATGATGTTCACTTAACAACCAAGAGGTGTAGTTGTCGGATGTGGGACATTTT
GGAAATTTCGTGTTCTCATGCATGCGTTGTGTTGACGACTAAACACGTATCCATCAAGAAGTATACATCAAACTTCTACCTTAGCAAGACTCTATCTTCTATATACAGTG
GCTTAATTCATCCATTAGGACATGAGTCTAGCTGGATTATTCCCGAAGAGGTAAAGAACATCAAAATTTTGCCCCTCAATGTGAAGCGTTCTGCTGGAAGGCCGAAGAAG
ATCAAGATCCCTTCCCAAATGGAATTCAAGAGGCGTGTGAAATGTGGTCGTTGTGGACGATCTGAGTACAATCGAAAATCTTGCAAATTTTCCCTCACCCAATGA
Protein sequenceShow/hide protein sequence
MQVNPVDNMQFQVIDGTSQYDVHLTTKRCSCRMWDILEISCSHACVVLTTKHVSIKKYTSNFYLSKTLSSIYSGLIHPLGHESSWIIPEEVKNIKILPLNVKRSAGRPKK
IKIPSQMEFKRRVKCGRCGRSEYNRKSCKFSLTQ