CuGenDBv2

Gene ID	Lag0018445
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DNA-directed RNA polymerase V subunit 5A
Genome location	chr5:27581751..27582851
RNA-Seq Expression	Lag0018445
Synteny	Lag0018445
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0055029 - nuclear DNA-directed RNA polymerase complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR000783 - RNA polymerase, subunit H/Rpb5 C-terminal IPR035913 - RPB5-like RNA polymerase subunit superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053863.1 DNA-directed RNA polymerase V subunit 5A [Cucumis melo var. makuwa]

2.6e-09

58.57

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQCR-FHDYRLCKKFVSTITADMSKRSL
        +LPR+LRTDAIARYYGLEKG+VVKV+YDGDMT +H      GF+ + F      K+ VSTITA M  + L
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQCR-FHDYRLCKKFVSTITADMSKRSL

XP_004136650.1 DNA-directed RNA polymerase V subunit 5A [Cucumis sativus]

2.9e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG+VVKV+YDGDMTR+H
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

XP_022950954.1 DNA-directed RNA polymerase V subunit 5A isoform X1 [Cucurbita moschata]

1.7e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG++VKV+YDGDMTRSH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

XP_022950955.1 DNA-directed RNA polymerase V subunit 5A isoform X2 [Cucurbita moschata]

1.7e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG++VKV+YDGDMTRSH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

XP_023539155.1 DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]

1.7e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG++VKV+YDGDMTRSH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LCG9 Uncharacterized protein

1.4e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG+VVKV+YDGDMTR+H
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

A0A5D3DQJ3 DNA-directed RNA polymerase V subunit 5A

1.3e-09

58.57

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQCR-FHDYRLCKKFVSTITADMSKRSL
        +LPR+LRTDAIARYYGLEKG+VVKV+YDGDMT +H      GF+ + F      K+ VSTITA M  + L
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQCR-FHDYRLCKKFVSTITADMSKRSL

A0A6J1E191 DNA-directed RNA polymerase V subunit 5A

3.1e-08

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG+VVKV+YDGDMT SH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

A0A6J1GH86 DNA-directed RNA polymerase V subunit 5A isoform X2

8.2e-09

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG++VKV+YDGDMTRSH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

A0A6J1GHB9 DNA-directed RNA polymerase V subunit 5A isoform X1

8.2e-09

85.71

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPR+LRTDAIARYYGLEKG++VKV+YDGDMTRSH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

SwissProt top hits

e value

%identity

Alignment

Q9M1J2 DNA-directed RNA polymerase V subunit 5A

4.3e-07

55.56

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQC
        +LPR+ + DAI RYYGLEKG+VVKV+Y G++T SH     + F+C
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQC

Q9ZVB9 DNA-directed RNA polymerases IV and V subunit 5B

4.5e-04

54.29

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPRL   D I RYYGLE G+V+KV+Y  +++ SH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

Arabidopsis top hits

e value

%identity

Alignment

AT2G41340.1 RNA polymerase II fifth largest subunit, D

3.2e-05

54.29

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH
        +LPRL   D I RYYGLE G+V+KV+Y  +++ SH
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSH

AT3G57080.1 Eukaryotic rpb5 RNA polymerase subunit family protein

3.1e-08

55.56

Show/hide

Query:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQC
        +LPR+ + DAI RYYGLEKG+VVKV+Y G++T SH     + F+C
Subjt:  RLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQC

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATGATTGGTGGGAGGTCTTGATGATACGGCTTCCTCGTTTGTTACGTACGGATGCTATTGCTAGATATTATGGACTTGAGAAGGGGCGGGTTGTGAAAGTGTCTTA
TGATGGTGATATGACTAGGTCACATAACTCCTTGTATTTACTAGGTTTTCAGTGCAGATTTCATGATTACAGGCTTTGCAAGAAATTTGTATCCACAATTACTGCAGACA
TGAGTAAAAGATCCCTTCATGTGAGAGATATGGCCATTCTCATGAGAACAATTCCTAATCTTCACTCAACCTGTGTGAAGGGACAGATTTGGGGTTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNDWWEVLMIRLPRLLRTDAIARYYGLEKGRVVKVSYDGDMTRSHNSLYLLGFQCRFHDYRLCKKFVSTITADMSKRSLHVRDMAILMRTIPNLHSTCVKGQIWG

Lag0018445 (gene) of Sponge gourd (AG-4) v1 genome