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Lag0018451 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018451
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr5:27709422..27710453
RNA-Seq ExpressionLag0018451
SyntenyLag0018451
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAU21788.1 hypothetical protein TSUD_329120, partial [Trifolium subterraneum]1.8e-1440.95Show/hide
Query:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD
        LGN++GTFEE+D+ +E  R    LRM V  DL KPLK G   ++  + +E+WV   YER P+ C+ CG++GH  ++C++          E  E++  FG 
Subjt:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD

Query:  WIRAS
        W+RAS
Subjt:  WIRAS

GER41574.1 cellular nucleic acid-binding protein [Striga asiatica]6.3e-1539.29Show/hide
Query:  VEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASL
        ++ + ++ GT  EVD  E    W    R+ V   L+ PLK  + VR+ ++A+EV + + YER PD CY CG++GHV KEC+  E + E   FG W++AS 
Subjt:  VEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASL

Query:  -IVGVTNHRGQR
         I G  N    R
Subjt:  -IVGVTNHRGQR

KAF5477665.1 hypothetical protein F2P56_004284, partial [Juglans regia]2.4e-1440.82Show/hide
Query:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASLI
        +GNSLG F +V +DE    W   LR+ V+ D+TK L  G+ + +  K  + WV   YER P LC+KCG + HV   C  QE  E +  +G W+RA ++
Subjt:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASLI

MCH80348.1 hypothetical protein [Trifolium medium]2.4e-1440.95Show/hide
Query:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD
        LGN++GTFEE+D  +E  R    LRM V  DL KPLK G   ++  + +E+WV   YER P+ C+ CG++GH  ++C++          E  E++  FG 
Subjt:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD

Query:  WIRAS
        W+RAS
Subjt:  WIRAS

XP_042942846.1 uncharacterized protein LOC122277028 [Carya illinoinensis]1.1e-1435.48Show/hide
Query:  EILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKEC-----KEQEQSEEEHLFGDWI
        +++G++LG   EVD+D +D  W   +R+ +  D+TKPL     + +G    E WV+ TYER PD CY+CG++GH  KEC     +  +  EE   +G W+
Subjt:  EILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKEC-----KEQEQSEEEHLFGDWI

Query:  RASLIVGVTNHRGQREKKDFGWGR
        RA+   G   +  +  +KD   G+
Subjt:  RASLIVGVTNHRGQREKKDFGWGR

TrEMBL top hitse value%identityAlignment
A0A2Z6LV25 Uncharacterized protein (Fragment)8.9e-1540.95Show/hide
Query:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD
        LGN++GTFEE+D+ +E  R    LRM V  DL KPLK G   ++  + +E+WV   YER P+ C+ CG++GH  ++C++          E  E++  FG 
Subjt:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD

Query:  WIRAS
        W+RAS
Subjt:  WIRAS

A0A392M033 CCHC-type domain-containing protein (Fragment)1.2e-1440.95Show/hide
Query:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD
        LGN++GTFEE+D  +E  R    LRM V  DL KPLK G   ++  + +E+WV   YER P+ C+ CG++GH  ++C++          E  E++  FG 
Subjt:  LGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKE---------QEQSEEEHLFGD

Query:  WIRAS
        W+RAS
Subjt:  WIRAS

A0A5A7Q953 Cellular nucleic acid-binding protein3.0e-1539.29Show/hide
Query:  VEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASL
        ++ + ++ GT  EVD  E    W    R+ V   L+ PLK  + VR+ ++A+EV + + YER PD CY CG++GHV KEC+  E + E   FG W++AS 
Subjt:  VEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASL

Query:  -IVGVTNHRGQR
         I G  N    R
Subjt:  -IVGVTNHRGQR

A0A6J1D765 uncharacterized protein LOC1110179022.0e-1434.03Show/hide
Query:  SVKWVEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQ---SEEEHLFG
        S +   ILG  LG  EE++ D  D      +R+ VK D++KPL+ GI ++  S  +++W  + YE+ PD CY+CGK+GH  +EC+++ +   +     +G
Subjt:  SVKWVEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQ---SEEEHLFG

Query:  DWIRASLIVGVTNH-------RGQREKKDFGWGRGRGRRNGEER
        DW+RA+L+    +H       RG R  +      GRG R    R
Subjt:  DWIRASLIVGVTNH-------RGQREKKDFGWGRGRGRRNGEER

A0A803PVI8 Uncharacterized protein1.5e-1441.28Show/hide
Query:  ESVKWVEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKEC-----KEQEQSEEEH
        +S    +ILGN +GTF EV  D  +  W   LRM V+ D++KPL  G  V     A+E+W+   YER PD CY+CG +GHVF +C     K  +  E   
Subjt:  ESVKWVEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSKAEEVWVKITYERFPDLCYKCGKVGHVFKEC-----KEQEQSEEEH

Query:  LFGDWIRAS
        L+G W+  S
Subjt:  LFGDWIRAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCAACGCCTTTTGAATCACTCAAATCGGAGAAGACAAACGATGAAGAAGAATTAGCACAACAACAACCACCATCGGAGAAGAAAGATGAGCAAGAAGCCCGACC
TTTTACGTCGCAGATGGACATCTCCAAGGAGAAAGAGAATATGGAATCGGATGAAGAATCTGTGAAATGGGTAGAGATTTTAGGAAACTCACTAGGAACTTTTGAAGAGG
TGGACTTGGATGAAGAAGACAGGAGATGGGAAAACTCTCTGAGGATGTTGGTTAAGTTCGACCTCACAAAGCCTTTAAAAGGGGGAATCCTAGTCAGAATAGGCTCAAAA
GCAGAAGAGGTTTGGGTGAAAATCACGTATGAAAGGTTTCCAGATTTATGTTATAAATGTGGAAAGGTAGGGCATGTATTCAAAGAATGCAAAGAGCAGGAACAATCAGA
AGAGGAGCACCTCTTTGGAGATTGGATAAGAGCTTCGCTGATTGTAGGAGTAACAAATCACAGAGGTCAAAGGGAAAAGAAGGACTTTGGATGGGGAAGAGGCAGGGGTA
GAAGAAATGGGGAGGAGAGGCTTTTACCCAGCGAGGAGTTGGCACTCAGGCGGAGAGGACTTCACCGAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCAACGCCTTTTGAATCACTCAAATCGGAGAAGACAAACGATGAAGAAGAATTAGCACAACAACAACCACCATCGGAGAAGAAAGATGAGCAAGAAGCCCGACC
TTTTACGTCGCAGATGGACATCTCCAAGGAGAAAGAGAATATGGAATCGGATGAAGAATCTGTGAAATGGGTAGAGATTTTAGGAAACTCACTAGGAACTTTTGAAGAGG
TGGACTTGGATGAAGAAGACAGGAGATGGGAAAACTCTCTGAGGATGTTGGTTAAGTTCGACCTCACAAAGCCTTTAAAAGGGGGAATCCTAGTCAGAATAGGCTCAAAA
GCAGAAGAGGTTTGGGTGAAAATCACGTATGAAAGGTTTCCAGATTTATGTTATAAATGTGGAAAGGTAGGGCATGTATTCAAAGAATGCAAAGAGCAGGAACAATCAGA
AGAGGAGCACCTCTTTGGAGATTGGATAAGAGCTTCGCTGATTGTAGGAGTAACAAATCACAGAGGTCAAAGGGAAAAGAAGGACTTTGGATGGGGAAGAGGCAGGGGTA
GAAGAAATGGGGAGGAGAGGCTTTTACCCAGCGAGGAGTTGGCACTCAGGCGGAGAGGACTTCACCGAAAATAA
Protein sequenceShow/hide protein sequence
MIPTPFESLKSEKTNDEEELAQQQPPSEKKDEQEARPFTSQMDISKEKENMESDEESVKWVEILGNSLGTFEEVDLDEEDRRWENSLRMLVKFDLTKPLKGGILVRIGSK
AEEVWVKITYERFPDLCYKCGKVGHVFKECKEQEQSEEEHLFGDWIRASLIVGVTNHRGQREKKDFGWGRGRGRRNGEERLLPSEELALRRRGLHRK