CuGenDBv2

Gene ID	Lag0018475
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Protein Ycf2
Genome location	chr5:27967228..27971112
RNA-Seq Expression	Lag0018475
Synteny	Lag0018475
Gene Ontology terms	GO:0009570 - chloroplast stroma (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function)
InterPro domains	IPR008543 - Uncharacterised protein family Ycf2

Homology

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GenBank top hits

e value

%identity

Alignment

QIT04093.1 Ycf2 protein [Luffa aegyptiaca]

6.7e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

QJR53001.1 hypothetical protein RF2 [Herpetospermum pedunculosum]

6.7e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

YP_009752370.1 Ycf2 protein [Bryonia marmorata]

6.7e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

YP_009752624.1 Ycf2 protein [Trichosanthes homophylla]

3.9e-36

77.57

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Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T + N ++   + +
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA

Query:  AGACILV
           C +V
Subjt:  AGACILV

YP_010131137.1 hypothetical protein RF2 [Benincasa hispida]

6.7e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

TrEMBL top hits

e value

%identity

Alignment

A0A343F2F1 Protein Ycf2

3.2e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

A0A6H0ERQ4 Protein Ycf2

1.9e-36

77.57

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T + N ++   + +
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA

Query:  AGACILV
           C +V
Subjt:  AGACILV

A0A6H0ET42 Protein Ycf2

1.9e-36

77.57

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T + N ++   + +
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA

Query:  AGACILV
           C +V
Subjt:  AGACILV

A0A6H0EV63 Protein Ycf2

3.2e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

A0A6M3RUH1 Protein Ycf2

3.2e-36

91.95

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

SwissProt top hits

e value

%identity

Alignment

A0ZZ78 Protein Ycf2

1.8e-36

67.74

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA
        MSRLFTEREK+MNNH LPEEIEEFLGNPTRSIRSFFSDRWSELH GSNP ERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T + N ++   + +
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA

Query:  AGACILVFFVLNPSTFLGRIWKVS
           C +V     P   LG   K+S
Subjt:  AGACILVFFVLNPSTFLGRIWKVS

A6MM80 Protein Ycf2

7.0e-36

86.21

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWSELH+GSNP ERSTRDQKLLKK+QDVSFVPSRRS+NKE+V  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

Q09FY5 Protein Ycf2

7.0e-36

86.21

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWSELH+GSNP ERSTRDQKLLKK+QDVSFVPSRRS+NKE+V  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

Q0G9F7 Protein Ycf2

7.0e-36

86.21

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWSELH+GSNP ERSTRDQKLLKK+QDVSFVPSRRS+NKE+V  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

Q2L949 Protein Ycf2

1.1e-36

67.74

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA
        MSRLFTEREK+MNNH LPEEIEEFLGNPTRSIRSFFSDRWSELH+GSNP ERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T + N ++   + +
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET-VANPLARIDVKA

Query:  AGACILVFFVLNPSTFLGRIWKVS
           C +V     P   LG   K+S
Subjt:  AGACILVFFVLNPSTFLGRIWKVS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00860.1 Chloroplast Ycf2;ATPase, AAA type, core

9.3e-36

83.91

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWSELH+GSNP ERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

ATCG01280.1 Chloroplast Ycf2;ATPase, AAA type, core

9.3e-36

83.91

Show/hide

Query:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET
        M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWSELH+GSNP ERSTRDQKLLKKEQDVSFVPSRRS+NKEIV  + + T
Subjt:  MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLET

Sequences

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CDS sequence

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ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATCCGCTTCCGGAAGAAATCGAAGAATTTCTCGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTC
TGACAGATGGTCAGAACTTCATATGGGTTCGAATCCTATTGAGAGGTCCACTAGAGATCAGAAATTGTTGAAGAAAGAACAAGATGTTTCTTTTGTCCCTTCCAGGCGAT
CGAAAAATAAAGAAATAGTTAAATTCTACTGCTTAGAAACTGTTGCAAATCCTCTCGCACGTATTGATGTGAAAGCAGCAGGGGCATGTATTTTGGTTTTCTTTGTGTTG
AATCCTAGCACTTTTCTTGGTAGGATTTGGAAAGTTTCAGATGATTTGGGTTTCGTTTCAAATCTAAAACGAAGGGAACTCGCGAAGTCGCCGACGGTAGAAGCAAAGAA
GAAGGTCGGTGGTTGTCGCTCGTCATGGGTCTTCGTGCAAGGAGGGACGAGGACGGAGATTCGAGCAGACGAAGTTTTCGTGCAAAAAGAAAACGAAGAGAAAAAAACAG
AAGAAGAAAATAAGGAAAACGAAGGAGAAGGAAAAGAAAAAAAAAGTCGGTCGCCGTCGCCGGCGGACGGCCGACGGTGGTCCACCGTCGGTGGTTGA

mRNA sequence

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Protein sequence

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MSRLFTEREKQMNNHPLPEEIEEFLGNPTRSIRSFFSDRWSELHMGSNPIERSTRDQKLLKKEQDVSFVPSRRSKNKEIVKFYCLETVANPLARIDVKAAGACILVFFVL
NPSTFLGRIWKVSDDLGFVSNLKRRELAKSPTVEAKKKVGGCRSSWVFVQGGTRTEIRADEVFVQKENEEKKTEEENKENEGEGKEKKSRSPSPADGRRWSTVGG

Lag0018475 (gene) of Sponge gourd (AG-4) v1 genome