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Lag0018503 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018503
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGRF-type domain-containing protein
Genome locationchr5:28422261..28423245
RNA-Seq ExpressionLag0018503
SyntenyLag0018503
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AES59725.1 GRF zinc finger protein [Medicago truncatula]4.7e-0545.16Show/hide
Query:  SESVRVDGSG--TKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQK
        S +  V GS    K    CYCG+ + L+T+WT +NPGRRF+GC  Y    R   F +G IQK
Subjt:  SESVRVDGSG--TKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQK

CAB4083566.1 unnamed protein product [Lactuca saligna]1.1e-0447.27Show/hide
Query:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGF
        GN+ES  +  S   N   CYCG RA + TSWT++NPGRRF+GC  Y    +  G+
Subjt:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGF

KAF8019906.1 hypothetical protein BT93_G0562 [Corymbia citriodora subsp. variegata]1.4e-0452.17Show/hide
Query:  NSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK
        ++ S R DG G +   +CYCGL +   TSWT+ NPGRRFYGC+ Y+
Subjt:  NSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK

PIN21218.1 DNA topoisomerase [Handroanthus impetiginosus]1.1e-0462.16Show/hide
Query:  SGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK
        S  +  TYC+CG RA L TSWTK NPGRRF+ C  YK
Subjt:  SGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK

XP_017245956.1 PREDICTED: ERI1 exoribonuclease 2-like [Daucus carota subsp. sativus]6.2e-0556.52Show/hide
Query:  ESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGM
        +SV+ D  GT     C+CG RAR+ TSWT +NPGRRFY C+  KGM
Subjt:  ESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGM

TrEMBL top hitse value%identityAlignment
A0A166G368 GRF-type domain-containing protein3.0e-0556.52Show/hide
Query:  ESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGM
        +SV+ D  GT     C+CG RAR+ TSWT +NPGRRFY C+  KGM
Subjt:  ESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGM

A0A2G9HUL6 DNA topoisomerase5.1e-0562.16Show/hide
Query:  SGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK
        S  +  TYC+CG RA L TSWTK NPGRRF+ C  YK
Subjt:  SGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK

A0A397YS27 GRF-type domain-containing protein1.1e-0444.68Show/hide
Query:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK
        G   S ++ G   ++   CYCG+ A++  +WT++NPGRRFYGC  YK
Subjt:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYK

A0A6S7M7J5 GRF-type domain-containing protein5.1e-0547.27Show/hide
Query:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGF
        GN+ES  +  S   N   CYCG RA + TSWT++NPGRRF+GC  Y    +  G+
Subjt:  GNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGF

G7I762 GRF zinc finger protein2.3e-0545.16Show/hide
Query:  SESVRVDGSG--TKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQK
        S +  V GS    K    CYCG+ + L+T+WT +NPGRRF+GC  Y    R   F +G IQK
Subjt:  SESVRVDGSG--TKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACGAGAAATGGGACAGAAAGCTCTGAAAATTACAATGGACAAGTGTGATGGAAATTCAGAGTCTGTAAGAGTCGATGGCAGTGGAACCAAGAACCCTACGTACTG
TTATTGTGGGTTACGAGCTCGATTAATTACTTCATGGACGAAGAGGAATCCTGGACGAAGGTTCTATGGATGTTCTGGTTACAAGGGAATGGCTCGGGTTGTGGGTTTTT
TGATTGGTGTGATCCAGAAGTTGTACGTAATTCTAGGATCGTTAGGCTTCTTGTCAAGTCCAACACATCTTGTTGTATTGATACAGTCTGTTTCTTCTGAAGCTGAAGTT
TCAAACCTGGGGGAGTGGAAGAACTGCAAGAACGTCAATTGTGAAGTAGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCACGAGAAATGGGACAGAAAGCTCTGAAAATTACAATGGACAAGTGTGATGGAAATTCAGAGTCTGTAAGAGTCGATGGCAGTGGAACCAAGAACCCTACGTACTG
TTATTGTGGGTTACGAGCTCGATTAATTACTTCATGGACGAAGAGGAATCCTGGACGAAGGTTCTATGGATGTTCTGGTTACAAGGGAATGGCTCGGGTTGTGGGTTTTT
TGATTGGTGTGATCCAGAAGTTGTACGTAATTCTAGGATCGTTAGGCTTCTTGTCAAGTCCAACACATCTTGTTGTATTGATACAGTCTGTTTCTTCTGAAGCTGAAGTT
TCAAACCTGGGGGAGTGGAAGAACTGCAAGAACGTCAATTGTGAAGTAGGATAA
Protein sequenceShow/hide protein sequence
MSREMGQKALKITMDKCDGNSESVRVDGSGTKNPTYCYCGLRARLITSWTKRNPGRRFYGCSGYKGMARVVGFLIGVIQKLYVILGSLGFLSSPTHLVVLIQSVSSEAEV
SNLGEWKNCKNVNCEVG