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Lag0018519 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018519
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:28770320..28770652
RNA-Seq ExpressionLag0018519
SyntenyLag0018519
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0848268.1 hypothetical protein [Gossypium schwendimanii]4.5e-0432.08Show/hide
Query:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEND
        AL MG RK+++E DS   IK L L    N  +  V S +      I  L   F ++ + ++PR+ N  A  +A   +   F   WVE  P  ++ +VE+D
Subjt:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEND

Query:  RVHIAH
        R    H
Subjt:  RVHIAH

ONI12089.1 hypothetical protein PRUPE_4G143500 [Prunus persica]6.3e-0632.65Show/hide
Query:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV
        GC  I++ESDS+  +  ++      K E E W+S    +  I   + +F D+   Y PR +N VA  +AK A   +  V W+E  P W+ S++ +D V
Subjt:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV

XP_020417817.1 uncharacterized protein LOC18779081 [Prunus persica]6.3e-0632.65Show/hide
Query:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV
        GC  I++ESDS+  +  ++      K E E W+S    +  I   + +F D+   Y PR +N VA  +AK A   +  V W+E  P W+ S++ +D V
Subjt:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV

XP_027169645.1 uncharacterized protein LOC113769391 [Coffea eugenioides]1.4e-0531.13Show/hide
Query:  MALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEN
        MA  +G  KIIV SDS+  I  +  +  +    A +   V+       EL  +F   RFV+IPR  N ++ ++ + A  L +D+ W ++FP+W++ LV  
Subjt:  MALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEN

Query:  DRVHIA
        + + +A
Subjt:  DRVHIA

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]1.2e-0436.78Show/hide
Query:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENF
        +M  +KIIV+SD   AI  L L I  +     VW      +  IWE+   F  I F YIPR IN +AD +AK  ++L  + +W++++
Subjt:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENF

TrEMBL top hitse value%identityAlignment
A0A1J6IBV8 RNase H domain-containing protein2.9e-0429.46Show/hide
Query:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPA-----WIVS
        A+ +G + + + SD++  +  ++  +  + +   +W         IW+L   F  + F+YIPRK+N VA S+AK +  L  D+ W + FP       +V+
Subjt:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPA-----WIVS

Query:  LV-ENDRVHIAH
        +V  ND  HI H
Subjt:  LV-ENDRVHIAH

A0A251PKK0 RNase H domain-containing protein3.1e-0632.65Show/hide
Query:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV
        GC  I++ESDS+  +  ++      K E E W+S    +  I   + +F D+   Y PR +N VA  +AK A   +  V W+E  P W+ S++ +D V
Subjt:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV

A0A6P6UBL0 uncharacterized protein LOC1137090836.4e-0430.61Show/hide
Query:  MALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLV
        MA ++G  KI + SDS+  +  +    +++   A +   VK       +L  +F    FV+IPR  N ++ ++AK A  L  D+ W ++FP W++ LV
Subjt:  MALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLV

A0A7J9KPE1 RNase H domain-containing protein2.2e-0432.08Show/hide
Query:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEND
        AL MG RK+++E DS   IK L L    N  +  V S +      I  L   F ++ + ++PR+ N  A  +A   +   F   WVE  P  ++ +VE+D
Subjt:  ALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVEND

Query:  RVHIAH
        R    H
Subjt:  RVHIAH

M5VP36 Uncharacterized protein (Fragment)9.8e-0531.63Show/hide
Query:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV
        G   I++ESDS+ A+  ++      K E E W+S    +  I   + +F D+   + PR +N VA  +AK A   +  V W+E  P W+ S++ +D V
Subjt:  GCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.2e-0425.53Show/hide
Query:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAK-GAKMLDFDVIWVENFPAWIVS
        R   ++II ESD++  +  L           + W +++  +  I +L+ +F +++F + PR  N VAD IA+      ++D       P W+ S
Subjt:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAK-GAKMLDFDVIWVENFPAWIVS

AT4G29090.1 Ribonuclease H-like superfamily protein1.8e-0628.57Show/hide
Query:  IIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAK-GAKMLDFDVIWVENFPAWIVSLVE
        +I ESDS++ I+ L           E+W S+K  +  +  L+  F +++FV+IPR+ N++A+ +A+     L++D       P+W  S ++
Subjt:  IIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAK-GAKMLDFDVIWVENFPAWIVSLVE

AT5G38920.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.7e-0529.7Show/hide
Query:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLD-FDVIWVENFPAWIVSLVENDR
        R+  RK+I ESDS+  +  L      +  +  +   +  D+     L+ +F + +FV++ R  N VAD IAK +  L+ +D       P W+ S VE D+
Subjt:  RMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLD-FDVIWVENFPAWIVSLVENDR

Query:  V
        +
Subjt:  V


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTGAGGATGGGATGTAGGAAAATAATTGTGGAGTCAGATTCGGAGCTTGCCATCAAATTCTTGGAGCTTGCCATCAAATTCAATAAGAAAGAAGCTGAAGTCTG
GAGCTCAGTGAAGTGTGATGTGGCTAGTATTTGGGAGCTTATTCCTTACTTTGCTGATATTAGATTTGTATATATCCCAAGGAAGATTAATTCTGTGGCAGATAGTATTG
CTAAAGGGGCTAAAATGTTAGATTTTGATGTTATCTGGGTCGAGAATTTCCCAGCTTGGATTGTTTCTTTGGTCGAGAATGACCGTGTTCATATTGCCCATGTGGCGTTT
TAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTGAGGATGGGATGTAGGAAAATAATTGTGGAGTCAGATTCGGAGCTTGCCATCAAATTCTTGGAGCTTGCCATCAAATTCAATAAGAAAGAAGCTGAAGTCTG
GAGCTCAGTGAAGTGTGATGTGGCTAGTATTTGGGAGCTTATTCCTTACTTTGCTGATATTAGATTTGTATATATCCCAAGGAAGATTAATTCTGTGGCAGATAGTATTG
CTAAAGGGGCTAAAATGTTAGATTTTGATGTTATCTGGGTCGAGAATTTCCCAGCTTGGATTGTTTCTTTGGTCGAGAATGACCGTGTTCATATTGCCCATGTGGCGTTT
TAA
Protein sequenceShow/hide protein sequence
MALRMGCRKIIVESDSELAIKFLELAIKFNKKEAEVWSSVKCDVASIWELIPYFADIRFVYIPRKINSVADSIAKGAKMLDFDVIWVENFPAWIVSLVENDRVHIAHVAF