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Lag0018539 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018539
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:29119535..29123799
RNA-Seq ExpressionLag0018539
SyntenyLag0018539
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0071704 - organic substance metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047995.1 retrotransposon protein, putative, Ty1-copia sub-class [Cucumis melo var. makuwa]4.0e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]4.0e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
TYK10877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.3e-1655.56Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS--LSDQENVKL
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG+ VKL+G L +GLYVL+GTTV G+AA+AS  L   +NV+L
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS--LSDQENVKL
TYK13826.1 putative polyprotein [Cucumis melo var. makuwa]4.0e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]4.0e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
TrEMBL top hitse value%identityAlignment
A0A5A7U2U7 Retrotransposon protein, putative, Ty1-copia sub-class1.9e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
A0A5A7UB25 Putative gag-pol polyprotein1.9e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.1e-1655.56Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS--LSDQENVKL
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG+ VKL+G L +GLYVL+GTTV G+AA+AS  L   +NV+L
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS--LSDQENVKL
A0A5D3CTV2 Putative polyprotein1.9e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
A0A5D3DNU1 Putative gag-pol polyprotein1.9e-1658.23Show/hide
Query:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
        Q+   D   R++  VRYVP LKR+ +SLG  DRSG   K+ENGVMK+ KG++VKL+G L +GLYVL+GTTV G+AA+AS
Subjt:  QVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNGLYVLDGTTVLGTAALAS
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAGTTCCCAATGCACTTGCGTGAATGTGTTTCTGTGGTGTATGTATGATATGTATGAGGTCTTTGGGACCCACTTCGGCACACACATAGGCTTTGGACCGTGTGT
CGAGGTGTTTTGCCCTTTTGGGGTTGCTCTGTGCGCGTATGACCAGGATAGCTCTGCCACACATCTTGAGATTACTCGATGTGTGAGATGGCTCTGCTATGCATTTCGAG
ACTACTCAATGCATAGTATGACAGAGATTGCTTTGCTGAGCGTATTGAGGTTACTTTACGCCAGTATGACTAGAGATTTGGGTACAGACGTCTGTGTCTCTAGCTGGGTT
CTTGGATGTGATATAGTATCTTGTCTTCCAGGGAGTTTGTATGTGTATACGTGGTCTTGTTTCAGGACTTTAAGGCTCTTAATGAAGGTACAGTGTTACTTGGAAATCAT
CATGAATGCAAGATTAAAGGCATTGGTTCAATCCCAAGTAAAGATGTTTGATAATAAAACTAGAGTAATTCCAAGGGTGAGATATGTACCTGATCTTAAACGAAGCTTTC
TGTCTTTGGGTGTCTTTGACAGATCAGGGTATGTTTGTAAAACAGAAAATGGAGTAATGAAAATCATCAAGGGGGCCATGGTTAAACTAAAGGGAAAGTTGACCAATGGT
TTGTATGTACTTGATGGAACAACTGTCCTTGGAACAGCAGCACTGGCATCATTAAGTGATCAGGAAAATGTCAAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAGTTCCCAATGCACTTGCGTGAATGTGTTTCTGTGGTGTATGTATGATATGTATGAGGTCTTTGGGACCCACTTCGGCACACACATAGGCTTTGGACCGTGTGT
CGAGGTGTTTTGCCCTTTTGGGGTTGCTCTGTGCGCGTATGACCAGGATAGCTCTGCCACACATCTTGAGATTACTCGATGTGTGAGATGGCTCTGCTATGCATTTCGAG
ACTACTCAATGCATAGTATGACAGAGATTGCTTTGCTGAGCGTATTGAGGTTACTTTACGCCAGTATGACTAGAGATTTGGGTACAGACGTCTGTGTCTCTAGCTGGGTT
CTTGGATGTGATATAGTATCTTGTCTTCCAGGGAGTTTGTATGTGTATACGTGGTCTTGTTTCAGGACTTTAAGGCTCTTAATGAAGGTACAGTGTTACTTGGAAATCAT
CATGAATGCAAGATTAAAGGCATTGGTTCAATCCCAAGTAAAGATGTTTGATAATAAAACTAGAGTAATTCCAAGGGTGAGATATGTACCTGATCTTAAACGAAGCTTTC
TGTCTTTGGGTGTCTTTGACAGATCAGGGTATGTTTGTAAAACAGAAAATGGAGTAATGAAAATCATCAAGGGGGCCATGGTTAAACTAAAGGGAAAGTTGACCAATGGT
TTGTATGTACTTGATGGAACAACTGTCCTTGGAACAGCAGCACTGGCATCATTAAGTGATCAGGAAAATGTCAAACTATGA
Protein sequenceShow/hide protein sequence
MVSSQCTCVNVFLWCMYDMYEVFGTHFGTHIGFGPCVEVFCPFGVALCAYDQDSSATHLEITRCVRWLCYAFRDYSMHSMTEIALLSVLRLLYASMTRDLGTDVCVSSWV
LGCDIVSCLPGSLYVYTWSCFRTLRLLMKVQCYLEIIMNARLKALVQSQVKMFDNKTRVIPRVRYVPDLKRSFLSLGVFDRSGYVCKTENGVMKIIKGAMVKLKGKLTNG
LYVLDGTTVLGTAALASLSDQENVKL