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Lag0018540 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018540
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr5:29167815..29171386
RNA-Seq ExpressionLag0018540
SyntenyLag0018540
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72931.1 hypothetical protein OsI_06781 [Oryza sativa Indica Group]2.7e-0536.44Show/hide
Query:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN
        DSSG+TI    + +N        E+RA +EGL  +        +  +LPI V  D + V+ LLN+ E D+SE++ +V E +RL+A    I  S   +SQN
Subjt:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN

Query:  EGAHL---RVMIDSVNGL
          +HL   R  +DSV+G+
Subjt:  EGAHL---RVMIDSVNGL
XP_025877173.1 uncharacterized protein LOC107278050 isoform X1 [Oryza sativa Japonica Group]6.6e-0433.9Show/hide
Query:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN
        D+SGST+    + ++   +    E+RA +EGL    ++    T   + PI +  D V ++NLL     D SE++ LV EI+RL++E  E+  +   +SQN
Subjt:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN

Query:  EGAHL---RVMIDSVNGL
          +HL   R   DS++GL
Subjt:  EGAHL---RVMIDSVNGL
TrEMBL top hitse value%identityAlignment
B8AFN2 RNase H domain-containing protein1.3e-0536.44Show/hide
Query:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN
        DSSG+TI    + +N        E+RA +EGL  +        +  +LPI V  D + V+ LLN+ E D+SE++ +V E +RL+A    I  S   +SQN
Subjt:  DSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQN

Query:  EGAHL---RVMIDSVNGL
          +HL   R  +DSV+G+
Subjt:  EGAHL---RVMIDSVNGL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACTCTTCAGGTTCTACAATCTGTGTGGGGCTCAGAAGAATTAACGGCAAATGGTCAGTAAAGATGCTAGAGATGAGAGCTATTCTTGAAGGTTTGAGGAGCTT
ACCGGTGATAAGAGCTTCTCGCACAAACCTCGCAATCCTCCCCATTGAGGTTGTTTTTGACGTCGTTGGCGTGATTAATCTGCTAAACAATACAGAGACAGACCAATCGG
AGATCTCCTTTTTGGTTAGTGAAATCGAGCGTTTAATAGCCGAGTATGAAGAGATCTCTTTCTCCCACAACCCGCAATCACAAAATGAGGGAGCGCATCTGAGGGTCATG
ATTGATTCCGTCAACGGCTTGAGATCCGATAAGTCTTCGTATTCTCCGGCCAGGACCTTAATCACGACAAGGGCGTTAAGATTCGACTTCCCGCTCGATTTGCTTTTGGA
GACAGGATTCTTAAGTTTGGCTTCTGTTTCTTTAGTTCCAGATACACCAAATAATGATCGAACCCCTTGCCAAATCTTTTTTATTGAGCTTTTCTGTCATCCACCTCCGA
TAGTCCTTAGGGCTCCAATTCACCCTACAAAGCGAAAAGAGATCAAGGATTTTCGGGATAAAGGATTCCCACATTTGCTTAGAAATCTTACACTCCCAAATGAGCAAAGC
AGAGTAGAGAGAGGAAATAACACGCAGACTGATACAGGGACAAAACTTAACAGCCGCTGGTCACGTTTCGCCGTGGTTCTCGGTTCAGAGAAGTTTCCACGCCAGTTTGA
GTCTGAGTCTCGTTGCGTGTCATCTCGTAGATTATCAACAATCACATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACTCTTCAGGTTCTACAATCTGTGTGGGGCTCAGAAGAATTAACGGCAAATGGTCAGTAAAGATGCTAGAGATGAGAGCTATTCTTGAAGGTTTGAGGAGCTT
ACCGGTGATAAGAGCTTCTCGCACAAACCTCGCAATCCTCCCCATTGAGGTTGTTTTTGACGTCGTTGGCGTGATTAATCTGCTAAACAATACAGAGACAGACCAATCGG
AGATCTCCTTTTTGGTTAGTGAAATCGAGCGTTTAATAGCCGAGTATGAAGAGATCTCTTTCTCCCACAACCCGCAATCACAAAATGAGGGAGCGCATCTGAGGGTCATG
ATTGATTCCGTCAACGGCTTGAGATCCGATAAGTCTTCGTATTCTCCGGCCAGGACCTTAATCACGACAAGGGCGTTAAGATTCGACTTCCCGCTCGATTTGCTTTTGGA
GACAGGATTCTTAAGTTTGGCTTCTGTTTCTTTAGTTCCAGATACACCAAATAATGATCGAACCCCTTGCCAAATCTTTTTTATTGAGCTTTTCTGTCATCCACCTCCGA
TAGTCCTTAGGGCTCCAATTCACCCTACAAAGCGAAAAGAGATCAAGGATTTTCGGGATAAAGGATTCCCACATTTGCTTAGAAATCTTACACTCCCAAATGAGCAAAGC
AGAGTAGAGAGAGGAAATAACACGCAGACTGATACAGGGACAAAACTTAACAGCCGCTGGTCACGTTTCGCCGTGGTTCTCGGTTCAGAGAAGTTTCCACGCCAGTTTGA
GTCTGAGTCTCGTTGCGTGTCATCTCGTAGATTATCAACAATCACATAG
Protein sequenceShow/hide protein sequence
MCDSSGSTICVGLRRINGKWSVKMLEMRAILEGLRSLPVIRASRTNLAILPIEVVFDVVGVINLLNNTETDQSEISFLVSEIERLIAEYEEISFSHNPQSQNEGAHLRVM
IDSVNGLRSDKSSYSPARTLITTRALRFDFPLDLLLETGFLSLASVSLVPDTPNNDRTPCQIFFIELFCHPPPIVLRAPIHPTKRKEIKDFRDKGFPHLLRNLTLPNEQS
RVERGNNTQTDTGTKLNSRWSRFAVVLGSEKFPRQFESESRCVSSRRLSTIT