; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018541 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018541
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:29239343..29241300
RNA-Seq ExpressionLag0018541
SyntenyLag0018541
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0008233 - peptidase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-1565.43Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST TR SAF+ LS+STSKK +PSTS FDRLK+ +DQ +R+M +L+VK F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0041559.1 hypothetical protein E6C27_scaffold93G00150 [Cucumis melo var. makuwa]8.7e-1644.68Show/hide
Query:  TRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSLYPAALFLLQVRGFSVV
        TR S F+RLS+STSKK++PSTS FDRLK+ +DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEG+      ++    L L   RG S  
Subjt:  TRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSLYPAALFLLQVRGFSVV

Query:  QLLRCSSSKCKGSYVVRCCIVPSSLKFDGSHAALLIPSPSS
            C S +    +++ C        F  SH   L  S SS
Subjt:  QLLRCSSSKCKGSYVVRCCIVPSSLKFDGSHAALLIPSPSS

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.5e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein9.4e-1665.43Show/hide
Query:  MSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        MST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  MSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5A7TGM1 Retrotransposon gag protein1.6e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST TR SAF+ LS+STSKK +PSTS FDRLK+ +DQ +R+M +L+VK F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5A7TJM9 Uncharacterized protein4.2e-1644.68Show/hide
Query:  TRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSLYPAALFLLQVRGFSVV
        TR S F+RLS+STSKK++PSTS FDRLK+ +DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEG+      ++    L L   RG S  
Subjt:  TRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSLYPAALFLLQVRGFSVV

Query:  QLLRCSSSKCKGSYVVRCCIVPSSLKFDGSHAALLIPSPSS
            C S +    +++ C        F  SH   L  S SS
Subjt:  QLLRCSSSKCKGSYVVRCCIVPSSLKFDGSHAALLIPSPSS

A0A5A7TQ06 Retrotransposon gag protein1.2e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

A0A5D3BBF9 Gag protease polyprotein1.2e-1566.25Show/hide
Query:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL
        ST  R SAF+RLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+HS VPSRMKRK SV I TEGSL
Subjt:  STSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCA
ACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTCTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTC
TCATAACTACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCC
TCCTCCAAGTGCAAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGATTCCTTCCCCAAGTTCGAAGGT
TCTCACACGCTTCGTGCAGTTCCTTCCCCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCTCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGGCTGCTGCAGTTCATTCTCCAAGTTCGAAGGTTCTCACGTCGCTTC
GCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGT
TCGAAGGTTCACGCACTTCGCTGCAGTGCCTTCCTCCAAATTCGAAGATTCTCACACGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCACTTCGTTGCA
TTTCCTTCCCCCAAATTCGAAGGTGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCT
CACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAATCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
CACTTTGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCACTT
GCCACAGTTCCTTCCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCA
CAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCTCGAAGGTTCTCACGGGCATCGCCACAGTTCCTTCCTCCAAAGTTCT
CGAAGGTTCACACGCGCTTCGCCACAGTTCCCCTTCCTCCAAGATCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCAA
GTTCAAGTTCAAAGGTTCACACGCGGCGCTTCGCCACAGTTCCTTTCGAACTCCTTCCTCCAAGTTTGAAAGGTTTCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATCTGTTTTTGATCGCCTCAAAGTAACAAGCGATCA
ACCTAAAAGAAAAATGGACAACTTGGAGGTGAAACTCTTCGATGAAGTAAACCGCGACAAGAAGCTTCATAGTAGCGTCCCGTCACGTATGAAGAGGAAATTCTCTGTTC
TCATAACTACAGAAGGTTCCTTGAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACAACTGCTACGTTGTTCC
TCCTCCAAGTGCAAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTCTCAAGTTCGATGGTTCTCACGCAGCTTTGCTGATTCCTTCCCCAAGTTCGAAGGT
TCTCACACGCTTCGTGCAGTTCCTTCCCCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCCAAATCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTT
CCTCCAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCGGCTGCTGCAGTTCATTCTCCAAGTTCGAAGGTTCTCACGTCGCTTC
GCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTGCTTCGCTGCAGTTCCTTCTCTCCAAGGTCGAAGGTTCTCACGCGCTGCGTTGCAGTTCTTTCTCCCCAAGT
TCGAAGGTTCACGCACTTCGCTGCAGTGCCTTCCTCCAAATTCGAAGATTCTCACACGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCACTTCGTTGCA
TTTCCTTCCCCCAAATTCGAAGGTGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCCGCTGCTGCAGTTCATTCTTCCAAGTTCGAAGGTTCT
CACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCAAATCCTTCCTCCAAGTTCGAAGGTTCACACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACG
CACTTTGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCACTT
GCCACAGTTCCTTCCCTCCAAGTTCGAATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCCA
CAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCTCGAAGGTTCTCACGGGCATCGCCACAGTTCCTTCCTCCAAAGTTCT
CGAAGGTTCACACGCGCTTCGCCACAGTTCCCCTTCCTCCAAGATCGAAGGTTCTCACGCGCATCGCCACAGTTCCTTCCTCCAAGTTCGAATCCTTCCTCCAAGTTCAA
GTTCAAGTTCAAAGGTTCACACGCGGCGCTTCGCCACAGTTCCTTTCGAACTCCTTCCTCCAAGTTTGAAAGGTTTCTCCTAG
Protein sequenceShow/hide protein sequence
MSTSTRPSAFQRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNRDKKLHSSVPSRMKRKFSVLITTEGSLKFEGSSLYPAALFLLQVRGFSVVQLLRCS
SSKCKGSYVVRCCIVPSSLKFDGSHAALLIPSPSSKVLTRFVQFLPPIRRFSRASLQFLPPKSKVLTRFAAVPSSNSKVLTRFAAVPSSKFEGSRLLQFILQVRRFSRRF
AAVPSSKFEGSHVLRCSSFSPRSKVLTRCVAVLSPQVRRFTHFAAVPSSKFEDSHTLRAVPSSKFEGSHALRCISFPQIRRCSYALRCSSFLQVRRFSAAAVHSSKFEGS
HVASLQFLPPSSNPSSKFEGSHAHRHSSFLQVRRFSRTLPQFLPPSSNPSSKFEGSHALRHSSFLQVRRFSRTCHSSFPPSSNPSSKFEGSHALRHSSFLQVRRFSRASP
QFLPPSSKVLTRIATVPSSKFSKVLTGIATVPSSKVLEGSHALRHSSPSSKIEGSHAHRHSSFLQVRILPPSSSSSSKVHTRRFATVPFELLPPSLKGFS