; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018544 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018544
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionubiquitin-like
Genome locationchr5:29269295..29269827
RNA-Seq ExpressionLag0018544
SyntenyLag0018544
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0031386 - protein tag (molecular function)
GO:0031625 - ubiquitin protein ligase binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025481.1 polyubiquitin-like [Cucumis melo var. makuwa]3.2e-2144.19Show/hide
Query:  SVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFN
        + +EAVQAL D+DEDL F+AFDFLE +N AK+F++M+   R +WL R L   P MKI +KT+ GK + + V    TI ++K K+  KE Y P   R +  
Subjt:  SVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFN

Query:  GWKLEDEKTLADCGVWSGSSLHLVLCVCG
        G +LE+ ++L+D  +  GS++H +  VCG
Subjt:  GWKLEDEKTLADCGVWSGSSLHLVLCVCG

XP_008463442.1 PREDICTED: polyubiquitin-like [Cucumis melo]7.1e-5372.03Show/hide
Query:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ
        N+D+ +SNS+ SI++V++AV+ALPDMDEDL+ DAFDFL +NENKAK+F+SMD K R+KWLI+ LRPQP+M+IFVKTL+G+KM+LDVLT+DTI DVKAKI+
Subjt:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ

Query:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC
        AKEGYP + QRLVFNGWKL+D++TL  CG+WSGSSLHL+LCVC
Subjt:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC

XP_022154969.1 ubiquitin-like [Momordica charantia]1.2e-3154.41Show/hide
Query:  SNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPE
        S SISI +V++AVQALPDMDED + DA DFL+N    ++F+++  K RK+WL+RNL    QMKI  +T+ GK+  L+VL SDT+  VKAKI+ KEGYPPE
Subjt:  SNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPE

Query:  DQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
         QRL + G +LE   TLA+C V  GS L ++L  CG
Subjt:  DQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

XP_022154970.1 ubiquitin-like isoform X1 [Momordica charantia]2.8e-3353.52Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        K  D  S SISI +V++AVQALPDMDEDL+ DA DF +N    ++F+++D K RK+WL+RNL    QM+I VK L GK +  ++L S+TI  VKAKI+A 
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EGYPP+ QRL++ G +LED +TLA+  + SGS+LH+V  +CG
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

XP_022154972.1 ubiquitin-like isoform X2 [Momordica charantia]3.4e-3152.82Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        K  D  S SISI +V++AVQALPDMDEDL+ DA DF +N    ++F+++D K RK+WL+RNL    Q  I VK L GK +  ++L S+TI  VKAKI+A 
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EGYPP+ QRL++ G +LED +TLA+  + SGS+LH+V  +CG
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

TrEMBL top hitse value%identityAlignment
A0A1S3CKU5 polyubiquitin-like3.4e-5372.03Show/hide
Query:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ
        N+D+ +SNS+ SI++V++AV+ALPDMDEDL+ DAFDFL +NENKAK+F+SMD K R+KWLI+ LRPQP+M+IFVKTL+G+KM+LDVLT+DTI DVKAKI+
Subjt:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ

Query:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC
        AKEGYP + QRLVFNGWKL+D++TL  CG+WSGSSLHL+LCVC
Subjt:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC

A0A5D3BMH5 Polyubiquitin-like3.4e-5372.03Show/hide
Query:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ
        N+D+ +SNS+ SI++V++AV+ALPDMDEDL+ DAFDFL +NENKAK+F+SMD K R+KWLI+ LRPQP+M+IFVKTL+G+KM+LDVLT+DTI DVKAKI+
Subjt:  NNDV-VSNSI-SIQSVVEAVQALPDMDEDLVFDAFDFL-ENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQ

Query:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC
        AKEGYP + QRLVFNGWKL+D++TL  CG+WSGSSLHL+LCVC
Subjt:  AKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVC

A0A6J1DL46 ubiquitin-like isoform X11.4e-3353.52Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        K  D  S SISI +V++AVQALPDMDEDL+ DA DF +N    ++F+++D K RK+WL+RNL    QM+I VK L GK +  ++L S+TI  VKAKI+A 
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EGYPP+ QRL++ G +LED +TLA+  + SGS+LH+V  +CG
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

A0A6J1DN50 ubiquitin-like isoform X21.7e-3152.82Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        K  D  S SISI +V++AVQALPDMDEDL+ DA DF +N    ++F+++D K RK+WL+RNL    Q  I VK L GK +  ++L S+TI  VKAKI+A 
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EGYPP+ QRL++ G +LED +TLA+  + SGS+LH+V  +CG
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

A0A6J1DNT8 ubiquitin-like5.7e-3254.41Show/hide
Query:  SNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPE
        S SISI +V++AVQALPDMDED + DA DFL+N    ++F+++  K RK+WL+RNL    QMKI  +T+ GK+  L+VL SDT+  VKAKI+ KEGYPPE
Subjt:  SNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPE

Query:  DQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
         QRL + G +LE   TLA+C V  GS L ++L  CG
Subjt:  DQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

SwissProt top hitse value%identityAlignment
P0CG82 Polyubiquitin8.5e-1758.02Show/hide
Query:  LRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        LR +  M+IFVKTL GK + LDV  SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TL+D  +   S+LHLVL + G
Subjt:  LRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

P0CG83 Polyubiquitin (Fragment)1.1e-1658.02Show/hide
Query:  LRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        LR +  M+IFVKTL GK + L+V +SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  LRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

P0CH11 Ubiquitin-60S ribosomal protein L401.9e-1660Show/hide
Query:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        M+IFVKTL GK + L+V +SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

Q3E7K8 Polyubiquitin 121.5e-1638.73Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        +++D + N   +++ ++ ++ +P     L+F      +    A   V  D       L   LR +  M+IFVKTL GK + L+V +SDTI ++KAKIQ K
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

Q9FHQ6 Polyubiquitin 91.5e-1639.72Show/hide
Query:  DVVSNSI--SIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKE
        DVVS+    ++++ ++ ++ +P   + L+F      +    A   +  D       L   LR +  M+IFVKTL GK + L+V +SDTI +VKAKIQ KE
Subjt:  DVVSNSI--SIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKE

Query:  GYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        G PP+ QRL+F G +L+D +TLAD  +   S+LHLVL + G
Subjt:  GYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

Arabidopsis top hitse value%identityAlignment
AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein1.8e-1760Show/hide
Query:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        M+IFVKTL GK + L+V +SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

AT1G31340.1 related to ubiquitin 11.8e-1760Show/hide
Query:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        M+IFVKTL GK + L+V +SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

AT1G55060.1 ubiquitin 121.0e-1738.73Show/hide
Query:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK
        +++D + N   +++ ++ ++ +P     L+F      +    A   V  D       L   LR +  M+IFVKTL GK + L+V +SDTI ++KAKIQ K
Subjt:  KNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAK

Query:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        EG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  EGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

AT1G65350.1 ubiquitin 131.8e-1760Show/hide
Query:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        M+IFVKTL GK + L+V +SDTI +VKAKIQ KEG PP+ QRL+F G +LED +TLAD  +   S+LHLVL + G
Subjt:  MKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG

AT5G37640.1 ubiquitin 91.0e-1739.72Show/hide
Query:  DVVSNSI--SIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKE
        DVVS+    ++++ ++ ++ +P   + L+F      +    A   +  D       L   LR +  M+IFVKTL GK + L+V +SDTI +VKAKIQ KE
Subjt:  DVVSNSI--SIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKE

Query:  GYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG
        G PP+ QRL+F G +L+D +TLAD  +   S+LHLVL + G
Subjt:  GYPPEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGACAAGTCGAACAAGAACAACGATGTAGTCTCAAACTCCATCTCCATTCAATCAGTCGTCGAAGCAGTCCAAGCATTACCAGACATGGATGAAGATCTTGTATT
CGATGCCTTTGATTTCCTAGAGAATGAAAACAAGGCCAAATTATTTGTTTCAATGGATGTCAAGTTTCGAAAGAAGTGGTTGATAAGAAACCTCCGTCCCCAGCCGCAGA
TGAAGATCTTCGTTAAAACTCTTGACGGCAAGAAGATGAATTTAGATGTTTTGACGTCGGATACAATCGCAGATGTGAAGGCTAAAATTCAAGCGAAGGAAGGGTATCCT
CCAGAAGATCAGCGCCTGGTTTTTAATGGTTGGAAGCTTGAAGATGAAAAAACTCTAGCAGACTGTGGCGTTTGGAGTGGCTCTTCGTTGCACTTGGTGCTTTGTGTGTG
TGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGACAAGTCGAACAAGAACAACGATGTAGTCTCAAACTCCATCTCCATTCAATCAGTCGTCGAAGCAGTCCAAGCATTACCAGACATGGATGAAGATCTTGTATT
CGATGCCTTTGATTTCCTAGAGAATGAAAACAAGGCCAAATTATTTGTTTCAATGGATGTCAAGTTTCGAAAGAAGTGGTTGATAAGAAACCTCCGTCCCCAGCCGCAGA
TGAAGATCTTCGTTAAAACTCTTGACGGCAAGAAGATGAATTTAGATGTTTTGACGTCGGATACAATCGCAGATGTGAAGGCTAAAATTCAAGCGAAGGAAGGGTATCCT
CCAGAAGATCAGCGCCTGGTTTTTAATGGTTGGAAGCTTGAAGATGAAAAAACTCTAGCAGACTGTGGCGTTTGGAGTGGCTCTTCGTTGCACTTGGTGCTTTGTGTGTG
TGGCTGA
Protein sequenceShow/hide protein sequence
MADKSNKNNDVVSNSISIQSVVEAVQALPDMDEDLVFDAFDFLENENKAKLFVSMDVKFRKKWLIRNLRPQPQMKIFVKTLDGKKMNLDVLTSDTIADVKAKIQAKEGYP
PEDQRLVFNGWKLEDEKTLADCGVWSGSSLHLVLCVCG