; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018559 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018559
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:29513744..29523211
RNA-Seq ExpressionLag0018559
SyntenyLag0018559
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045111.1 putative glutathione S-transferase isoform X1 [Cucumis melo var. makuwa]2.6e-2339.31Show/hide
Query:  PLVYLQELTSTALTF--DEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG-----
        P+ Y+ +    +L       A   +  NPEY  WKR+D++ISSWL+G M E+I +Q LHCT+ K+IW  L  I+++R LA+ M+ K KL  ++ G     
Subjt:  PLVYLQELTSTALTF--DEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG-----

Query:  ----------------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN
                              +DHIL+IL+GL +EY+S + VISA+    SV +VM+L LT+E+QIESK+T+
Subjt:  ----------------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]1.6e-2041.78Show/hide
Query:  NPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHIL
        N EY  WKR+D++ISSWL+G MSE+I +Q LH T+ K+IW  L  I+++R LA+ M+ K KL  ++ G                           +DHIL
Subjt:  NPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHIL

Query:  FILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN
        +IL+GL +EY+S + +ISA+    SV + M+L LT+E+QIESK+T+
Subjt:  FILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.0e-2638.71Show/hide
Query:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP
        NT   S   +IFGS    +  K+ D  +++ + + L       L+    +           T    A+ T TPNP Y  WKR+D++ISSWL+G MSEEI 
Subjt:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP

Query:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH
        +Q LHC + KEIW+ L  IF++R LAQ M+ K KL  I+ G                           +DHIL+IL+GL S+Y+S + VISA+    SV 
Subjt:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH

Query:  EVMALPLTKENQIESKL
        EVM+L LT+E+Q ESKL
Subjt:  EVMALPLTKENQIESKL

KAA0053143.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]3.5e-2343.21Show/hide
Query:  LTSTALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG--------------
        LTST        + T TPNPEY  WKR +++IS WL+G MSEEI +Q +HC + KEIW  L  IF++R LAQ M+ K KL  I+ G              
Subjt:  LTSTALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG--------------

Query:  -------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKL
                     +DHIL+IL GL  +Y+S + +ISA+    S+ EVM+L LT+E+Q ESKL
Subjt:  -------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]2.0e-2638.71Show/hide
Query:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP
        NT   S   +IFGS    +  K+ D  +++ + + L       L+    +           T    A+ T TPNP Y  WKR+D++ISSWL+G MSEEI 
Subjt:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP

Query:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH
        +Q LHC + KEIW+ L  IF++R LAQ M+ K KL  I+ G                           +DHIL+IL+GL S+Y+S + VISA+    SV 
Subjt:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH

Query:  EVMALPLTKENQIESKL
        EVM+L LT+E+Q ESKL
Subjt:  EVMALPLTKENQIESKL

TrEMBL top hitse value%identityAlignment
A0A5A7TUB3 Putative glutathione S-transferase isoform X11.3e-2339.31Show/hide
Query:  PLVYLQELTSTALTF--DEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG-----
        P+ Y+ +    +L       A   +  NPEY  WKR+D++ISSWL+G M E+I +Q LHCT+ K+IW  L  I+++R LA+ M+ K KL  ++ G     
Subjt:  PLVYLQELTSTALTF--DEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG-----

Query:  ----------------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN
                              +DHIL+IL+GL +EY+S + VISA+    SV +VM+L LT+E+QIESK+T+
Subjt:  ----------------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-949.5e-2738.71Show/hide
Query:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP
        NT   S   +IFGS    +  K+ D  +++ + + L       L+    +           T    A+ T TPNP Y  WKR+D++ISSWL+G MSEEI 
Subjt:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP

Query:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH
        +Q LHC + KEIW+ L  IF++R LAQ M+ K KL  I+ G                           +DHIL+IL+GL S+Y+S + VISA+    SV 
Subjt:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH

Query:  EVMALPLTKENQIESKL
        EVM+L LT+E+Q ESKL
Subjt:  EVMALPLTKENQIESKL

A0A5A7UB21 Keratin, type II cytoskeletal 1-like1.7e-2343.21Show/hide
Query:  LTSTALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG--------------
        LTST        + T TPNPEY  WKR +++IS WL+G MSEEI +Q +HC + KEIW  L  IF++R LAQ M+ K KL  I+ G              
Subjt:  LTSTALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG--------------

Query:  -------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKL
                     +DHIL+IL GL  +Y+S + +ISA+    S+ EVM+L LT+E+Q ESKL
Subjt:  -------------EDHILFILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-949.5e-2738.71Show/hide
Query:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP
        NT   S   +IFGS    +  K+ D  +++ + + L       L+    +           T    A+ T TPNP Y  WKR+D++ISSWL+G MSEEI 
Subjt:  NTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTST---------ALTFDEGATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIP

Query:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH
        +Q LHC + KEIW+ L  IF++R LAQ M+ K KL  I+ G                           +DHIL+IL+GL S+Y+S + VISA+    SV 
Subjt:  HQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHILFILSGLASEYESRVFVISAKVGPQSVH

Query:  EVMALPLTKENQIESKL
        EVM+L LT+E+Q ESKL
Subjt:  EVMALPLTKENQIESKL

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon7.8e-2141.78Show/hide
Query:  NPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHIL
        N EY  WKR+D++ISSWL+G MSE+I +Q LH T+ K+IW  L  I+++R LA+ M+ K KL  ++ G                           +DHIL
Subjt:  NPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNG---------------------------EDHIL

Query:  FILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN
        +IL+GL +EY+S + +ISA+    SV + M+L LT+E+QIESK+T+
Subjt:  FILSGLASEYESRVFVISAKVGPQSVHEVMALPLTKENQIESKLTN

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.2e-0523.62Show/hide
Query:  GATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNGEDHILFILSGLASEYESRVFVISA
        G       NP+YT+WKR+DK+I S ++G +S  +       TT  +IW+ L +I+   +   + +++ +L+    G   I   + GL + ++        
Subjt:  GATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNGEDHILFILSGLASEYESRVFVISA

Query:  KVGPQSVHEVMALPLTKENQIESKLTN
                 ++  P+  + Q+E  L N
Subjt:  KVGPQSVHEVMALPLTKENQIESKLTN

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.1e-0624.81Show/hide
Query:  GATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKI-----KLQTIQNGEDH---ILFILSGLASEYE
        G       NP+YT+W+R+DK+I S ++G +S  +       TT  +IW+ L +I+   +   + +++      +L  +    DH   +  +L  L  +Y+
Subjt:  GATTTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKI-----KLQTIQNGEDH---ILFILSGLASEYE

Query:  SRVFVISAKVGPQSVHEVMALPLTKENQI
          +  I+AK  P S+ E+    + +E+++
Subjt:  SRVFVISAKVGPQSVHEVMALPLTKENQI

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCCGCCATCTCGTCGCCGTGAACCGCCGCCATTTGCCGTCTCCCGAAGTGCCGCCAGCCACGAGCAGCCACTGCCACCCCTTGTTCGTCTTTCGTTTCAGATCTG
TTCGACGCCTTCAGCAATGGGAGACAGCGATTATGTATGGTTGGAATATGGAATGTTGGATATTGTGTGTTCTGGCGATACTAAATCTTTTGGTTATGCGTGTGATAAGA
AATTTGGGAACAACTATACTAGGAGTAGAGATCTCTTGCGATTCCCATTTGTGTACCTCCAGGGAGTTGGTAAGCATGTGACAGGCTGGTTAATTGTCCACGTGACCCTT
GGTATCAGAGCTCTAGGTTATAGGTTCTGTAGACTGGTTTACAACGTAAACCTTAAGTATGTCCATGGCTCATCAGCAAGCATCCGGTCACCGCCAGGGCTTAGAGAAAG
CTTTACCATCATGAGGTATATGCTTAAGTTTGAGATTAAAGTAGTCCGTATGGACAAGGAAAGAAAAGAAGATCTTAAGGGAGAGTTGGAGGAAACTTCTAGTTGGTGCA
GACGGTTAGCAATGGTTGCCAAAGAACTATTGGAAGGGAACTTTGAGGCTTTATTAGTGAACGGGTGTGCGACAAGTATGATATCCTTGGTTGCATCTCCTAGTCCATTG
GAGGGAGAGTTTGATCGTCTAGAAATGAAGTTGTCAGAGGAAAATATCCAAGCATGGTTGGCTCAACTCTCAATTGCGCCTAGTTTAAGACATCAAATTGTTGATGCCCA
ACAAGAGGACCTAAAATGGTCCGCCGCGCTCGTCTCCTTGCCGCCCACAGCCAGCCGCCGCATGCTGCCGCCATCTCGTCGCCGTGAATCGCCGCCATTTGCCGTCTCCC
GAAGTGCCGCCAGCCACGAGCAGCCACTGCCACCCCTTGTTGTCTTTCGTTTCAGATCTGTTCGACGCCTTCAGCAATGGGAGACAGCGATTATGTATGGTTGGAATATG
GAATGTTGGATATTGTGTGTTCTGGCGATACTAAATCTTTTGGTTATGCGTGTGTTTGTCACTATTGAACGCTCTGAATATTTTGTGTTGGTAAATATGAAATGTTCTGT
TTGGGTAAACCCTGAATGCTCTGAATGTGATAAGAAATTTGGGAACACTATACGTATGTCGTTATGCTGTCGAATTTTCGGTAGCATTACAGGGAATAATGAGGCTAAGA
TTCGTGATATCGCTTGGATTATGATTAGGAGTAGAGATCTCTTGCGATTCCCACTTGTGTACCTCCAGGAGTTGACTTCGACCGCATTGACTTTCGATGAGGGTGCAACT
ACGACTACAACTCCAAACCCTGAGTATACGCAGTGGAAGCGAAAGGACAAAATAATTTCTTCTTGGCTCGTTGGATTGATGTCCGAAGAGATACCTCATCAAAGGCTTCA
TTGCACCACAAACAAAGAAATTTGGGATTACCTTCATCAAATATTCACTACGCGCAACCTTGCTCAGATGATGAAAATAAAGATCAAATTACAAACTATCCAGAACGGAG
AGGATCATATCTTATTTATTCTCTCTGGTCTTGCGTCTGAATATGAGTCTAGGGTTTTTGTTATATCGGCCAAGGTTGGCCCTCAATCCGTTCATGAAGTAATGGCTCTA
CCTCTTACTAAAGAAAATCAGATTGAGAGCAAACTTACTAATACTGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGCCGCCATCTCGTCGCCGTGAACCGCCGCCATTTGCCGTCTCCCGAAGTGCCGCCAGCCACGAGCAGCCACTGCCACCCCTTGTTCGTCTTTCGTTTCAGATCTG
TTCGACGCCTTCAGCAATGGGAGACAGCGATTATGTATGGTTGGAATATGGAATGTTGGATATTGTGTGTTCTGGCGATACTAAATCTTTTGGTTATGCGTGTGATAAGA
AATTTGGGAACAACTATACTAGGAGTAGAGATCTCTTGCGATTCCCATTTGTGTACCTCCAGGGAGTTGGTAAGCATGTGACAGGCTGGTTAATTGTCCACGTGACCCTT
GGTATCAGAGCTCTAGGTTATAGGTTCTGTAGACTGGTTTACAACGTAAACCTTAAGTATGTCCATGGCTCATCAGCAAGCATCCGGTCACCGCCAGGGCTTAGAGAAAG
CTTTACCATCATGAGGTATATGCTTAAGTTTGAGATTAAAGTAGTCCGTATGGACAAGGAAAGAAAAGAAGATCTTAAGGGAGAGTTGGAGGAAACTTCTAGTTGGTGCA
GACGGTTAGCAATGGTTGCCAAAGAACTATTGGAAGGGAACTTTGAGGCTTTATTAGTGAACGGGTGTGCGACAAGTATGATATCCTTGGTTGCATCTCCTAGTCCATTG
GAGGGAGAGTTTGATCGTCTAGAAATGAAGTTGTCAGAGGAAAATATCCAAGCATGGTTGGCTCAACTCTCAATTGCGCCTAGTTTAAGACATCAAATTGTTGATGCCCA
ACAAGAGGACCTAAAATGGTCCGCCGCGCTCGTCTCCTTGCCGCCCACAGCCAGCCGCCGCATGCTGCCGCCATCTCGTCGCCGTGAATCGCCGCCATTTGCCGTCTCCC
GAAGTGCCGCCAGCCACGAGCAGCCACTGCCACCCCTTGTTGTCTTTCGTTTCAGATCTGTTCGACGCCTTCAGCAATGGGAGACAGCGATTATGTATGGTTGGAATATG
GAATGTTGGATATTGTGTGTTCTGGCGATACTAAATCTTTTGGTTATGCGTGTGTTTGTCACTATTGAACGCTCTGAATATTTTGTGTTGGTAAATATGAAATGTTCTGT
TTGGGTAAACCCTGAATGCTCTGAATGTGATAAGAAATTTGGGAACACTATACGTATGTCGTTATGCTGTCGAATTTTCGGTAGCATTACAGGGAATAATGAGGCTAAGA
TTCGTGATATCGCTTGGATTATGATTAGGAGTAGAGATCTCTTGCGATTCCCACTTGTGTACCTCCAGGAGTTGACTTCGACCGCATTGACTTTCGATGAGGGTGCAACT
ACGACTACAACTCCAAACCCTGAGTATACGCAGTGGAAGCGAAAGGACAAAATAATTTCTTCTTGGCTCGTTGGATTGATGTCCGAAGAGATACCTCATCAAAGGCTTCA
TTGCACCACAAACAAAGAAATTTGGGATTACCTTCATCAAATATTCACTACGCGCAACCTTGCTCAGATGATGAAAATAAAGATCAAATTACAAACTATCCAGAACGGAG
AGGATCATATCTTATTTATTCTCTCTGGTCTTGCGTCTGAATATGAGTCTAGGGTTTTTGTTATATCGGCCAAGGTTGGCCCTCAATCCGTTCATGAAGTAATGGCTCTA
CCTCTTACTAAAGAAAATCAGATTGAGAGCAAACTTACTAATACTGAATGA
Protein sequenceShow/hide protein sequence
MLPPSRRREPPPFAVSRSAASHEQPLPPLVRLSFQICSTPSAMGDSDYVWLEYGMLDIVCSGDTKSFGYACDKKFGNNYTRSRDLLRFPFVYLQGVGKHVTGWLIVHVTL
GIRALGYRFCRLVYNVNLKYVHGSSASIRSPPGLRESFTIMRYMLKFEIKVVRMDKERKEDLKGELEETSSWCRRLAMVAKELLEGNFEALLVNGCATSMISLVASPSPL
EGEFDRLEMKLSEENIQAWLAQLSIAPSLRHQIVDAQQEDLKWSAALVSLPPTASRRMLPPSRRRESPPFAVSRSAASHEQPLPPLVVFRFRSVRRLQQWETAIMYGWNM
ECWILCVLAILNLLVMRVFVTIERSEYFVLVNMKCSVWVNPECSECDKKFGNTIRMSLCCRIFGSITGNNEAKIRDIAWIMIRSRDLLRFPLVYLQELTSTALTFDEGAT
TTTTPNPEYTQWKRKDKIISSWLVGLMSEEIPHQRLHCTTNKEIWDYLHQIFTTRNLAQMMKIKIKLQTIQNGEDHILFILSGLASEYESRVFVISAKVGPQSVHEVMAL
PLTKENQIESKLTNTE