; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018562 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018562
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr5:29538612..29539376
RNA-Seq ExpressionLag0018562
SyntenyLag0018562
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR004332 - Transposase, MuDR, plant


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA36347.1 PREDICTED: transposon [Prunus dulcis]2.9e-3038.46Show/hide
Query:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR
        N E ++ VE     E  Y S ++ +  +  E        EF ++TD+DN +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWR
Subjt:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR

Query:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        L+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P    T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

XP_020080379.1 uncharacterized protein LOC109704055 [Ananas comosus]4.8e-3348.08Show/hide
Query:  EFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAK
        EFR ETD+ N +F +GM F+S K  + AI +Y++K  YN+KL KN+K +V A+  +GC W ++ S +    T Q+K   SEH C + F N+   SSWLAK
Subjt:  EFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAK

Query:  KYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        KYIDR RN P W LT F E V  D  V +SRT+ Y+A+RKAL  I G+  E+Y  L
Subjt:  KYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

XP_020417204.1 uncharacterized protein LOC18781319 [Prunus persica]5.0e-3034.29Show/hide
Query:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI
        N E+ + +      ++Y   ND          DV    E+  G  +    N E D+ VE     E  Y S ++ +  +  E        E  ++TD+DN 
Subjt:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI

Query:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD
        +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWRL+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P 
Subjt:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD

Query:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
           T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

XP_028052320.1 uncharacterized protein LOC114256842 [Camellia sinensis]1.7e-3034.17Show/hide
Query:  YHTSNDVSKDVERGEESD-----DGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNN----------PHFSEGDEVDGE---LEFRVETDIDNIRFCVG
        Y+ +N   K+ +   +SD     + ++ PT  ++  D +VE E   E     ++ + N           H    DE +G+   LEFR E D  N  F +G
Subjt:  YHTSNDVSKDVERGEESD-----DGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNN----------PHFSEGDEVDGE---LEFRVETDIDNIRFCVG

Query:  MKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQ
        M F+++   KDA+ +YA+K  Y+VK  K++  +V    SDGC+WRL+ S +   NT QIK+    HTC R + +R   S++LA KY+++ R  P W + +
Subjt:  MKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQ

Query:  FIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        F +TVK+D  V+IS+ + Y+AR++AL++++G   E+Y +L
Subjt:  FIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

XP_034229423.1 uncharacterized protein LOC117638399 [Prunus dulcis]2.9e-3038.46Show/hide
Query:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR
        N E ++ VE     E  Y S ++ +  +  E        EF ++TD+DN +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWR
Subjt:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR

Query:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        L+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P    T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

TrEMBL top hitse value%identityAlignment
A0A251PFQ5 ZnF_PMZ domain-containing protein2.4e-3034.29Show/hide
Query:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI
        N E+ + +      ++Y   ND          DV    E+  G  +    N E D+ VE     E  Y S ++ +  +  E        E  ++TD+DN 
Subjt:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI

Query:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD
        +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWRL+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P 
Subjt:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD

Query:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
           T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

A0A2N9HT52 SWIM-type domain-containing protein5.4e-3038.69Show/hide
Query:  PTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDG
        P SP   + +    +  + S YGS D LN+P+ S+ +      +FR  TD+D+  F VGM F  +  LK+A+  Y LK  + ++  KN++ +V     +G
Subjt:  PTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDG

Query:  CKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        C W+L     D   +FQI S  S HTC R FH+R  +S W+AKKYID  R  PD  L + I  V  D++V++SR++AY+A++ A + I G+ LE+YRR+
Subjt:  CKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

A0A5E4G990 PREDICTED: transposon1.4e-3038.46Show/hide
Query:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR
        N E ++ VE     E  Y S ++ +  +  E        EF ++TD+DN +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWR
Subjt:  NLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWR

Query:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        L+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P    T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  LHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

A0A6P5EAS5 uncharacterized protein LOC1097040552.3e-3348.08Show/hide
Query:  EFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAK
        EFR ETD+ N +F +GM F+S K  + AI +Y++K  YN+KL KN+K +V A+  +GC W ++ S +    T Q+K   SEH C + F N+   SSWLAK
Subjt:  EFRVETDIDNIRFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAK

Query:  KYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
        KYIDR RN P W LT F E V  D  V +SRT+ Y+A+RKAL  I G+  E+Y  L
Subjt:  KYIDRIRNQPDWSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

M5X0G1 ZnF_PMZ domain-containing protein (Fragment)2.4e-3034.29Show/hide
Query:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI
        N E+ + +      ++Y   ND          DV    E+  G  +    N E D+ VE     E  Y S ++ +  +  E        E  ++TD+DN 
Subjt:  NIEQLNGEARIYSIDWYHTSNDVS-------KDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNI

Query:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD
        +F VGMKF S K+LK AI+ Y    SY  K+ KNDK R++A   +GCKWRL+ S++   NT+QIKS   +H+C + FHN+N  S++L+++Y+ RI++ P 
Subjt:  RFCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPD

Query:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL
           T     V  +   ++S  Q YKA+RKA   I G   ++Y +L
Subjt:  WSLTQFIETVKNDYQVQISRTQAYKARRKALIKINGNLLERYRRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTTTAATTCCGAATGAACATAATTCAAATGAAGTAGCCTTCAACATTGAACAACTTAATGGTGAAGCGAGAATTTACTCGATTGATTGGTATCATACCTCTAA
TGATGTTTCTAAAGATGTGGAAAGAGGTGAGGAGTCAGACGATGGTGATGAGAGACCAACTTCACCAAACTTAGAATTAGATGTGCATGTTGAGATTGAATGGGAAGTTG
AGTCGGTTTATGGGTCAAAGGATGTCCTAAATAATCCACATTTTTCTGAAGGAGATGAGGTGGATGGAGAACTAGAGTTCAGGGTAGAGACTGATATAGATAATATTCGA
TTTTGTGTAGGTATGAAATTTAGCAGTTCTAAAATCTTAAAAGATGCTATAGAGGACTATGCACTTAAGGAGTCTTACAATGTGAAGCTAAAAAAGAATGACAAGAAAAG
AGTCACTGCAATTTATTCTGATGGGTGTAAGTGGAGGTTGCATGGAAGCGTTGTGGATGCAAATAATACATTTCAAATTAAGTCAATGATTAGTGAACATACATGTCCTA
GGATGTTTCACAATAGAAATACAAACTCATCTTGGTTGGCCAAGAAATACATTGACCGTATTAGAAACCAACCTGATTGGAGTCTCACTCAATTCATTGAAACAGTAAAA
AATGATTATCAAGTTCAAATTTCGAGGACCCAAGCTTATAAGGCTAGAAGGAAGGCCTTGATAAAGATTAATGGGAATCTCTTGGAACGATACAGGCGATTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTTTAATTCCGAATGAACATAATTCAAATGAAGTAGCCTTCAACATTGAACAACTTAATGGTGAAGCGAGAATTTACTCGATTGATTGGTATCATACCTCTAA
TGATGTTTCTAAAGATGTGGAAAGAGGTGAGGAGTCAGACGATGGTGATGAGAGACCAACTTCACCAAACTTAGAATTAGATGTGCATGTTGAGATTGAATGGGAAGTTG
AGTCGGTTTATGGGTCAAAGGATGTCCTAAATAATCCACATTTTTCTGAAGGAGATGAGGTGGATGGAGAACTAGAGTTCAGGGTAGAGACTGATATAGATAATATTCGA
TTTTGTGTAGGTATGAAATTTAGCAGTTCTAAAATCTTAAAAGATGCTATAGAGGACTATGCACTTAAGGAGTCTTACAATGTGAAGCTAAAAAAGAATGACAAGAAAAG
AGTCACTGCAATTTATTCTGATGGGTGTAAGTGGAGGTTGCATGGAAGCGTTGTGGATGCAAATAATACATTTCAAATTAAGTCAATGATTAGTGAACATACATGTCCTA
GGATGTTTCACAATAGAAATACAAACTCATCTTGGTTGGCCAAGAAATACATTGACCGTATTAGAAACCAACCTGATTGGAGTCTCACTCAATTCATTGAAACAGTAAAA
AATGATTATCAAGTTCAAATTTCGAGGACCCAAGCTTATAAGGCTAGAAGGAAGGCCTTGATAAAGATTAATGGGAATCTCTTGGAACGATACAGGCGATTATGA
Protein sequenceShow/hide protein sequence
MVSLIPNEHNSNEVAFNIEQLNGEARIYSIDWYHTSNDVSKDVERGEESDDGDERPTSPNLELDVHVEIEWEVESVYGSKDVLNNPHFSEGDEVDGELEFRVETDIDNIR
FCVGMKFSSSKILKDAIEDYALKESYNVKLKKNDKKRVTAIYSDGCKWRLHGSVVDANNTFQIKSMISEHTCPRMFHNRNTNSSWLAKKYIDRIRNQPDWSLTQFIETVK
NDYQVQISRTQAYKARRKALIKINGNLLERYRRL