; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018563 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018563
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr5:29539473..29539905
RNA-Seq ExpressionLag0018563
SyntenyLag0018563
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0032196 - transposition (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsIPR018289 - MULE transposase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_019077061.1 PREDICTED: uncharacterized protein LOC104879996 [Vitis vinifera]3.2e-3462.39Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        MYIC  ACK  FL GC P IG+D CHLKG   G L  AVG DGND I+PIA+A+VE E K SWTWFL  L DD+G+    G+ FISD+QKGLV TF D+ 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        PN  HRFCV
Subjt:  PNVNHRFCV

XP_023877950.1 uncharacterized protein LOC111990411 [Quercus suber]3.4e-3665.74Show/hide
Query:  YICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVFP
        Y+C  ACK  FL  C PFIG+D CHLKG   G L  AVG DGN GIYPIA+AVVEAETK+SWTWFLS L +D+G  + + +TF+SDQQKGLVPTFD++ P
Subjt:  YICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVFP

Query:  NVNHRFCV
         V+HRFCV
Subjt:  NVNHRFCV

XP_023899059.1 uncharacterized protein LOC112010914 [Quercus suber]1.3e-3561.47Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+C  ACK  FL  C PFIG+D CHLKG   G +  AVG DGN+G+YPIA+AVVEAETKDSWTWF+  L DD+G+   +G+TF+SDQQKGL   FD++ 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        P V+HRFCV
Subjt:  PNVNHRFCV

XP_023910579.1 uncharacterized protein LOC112022237 [Quercus suber]1.4e-3459.63Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+C  ACK  FL  C PFIG+D CHLKG   G +   VG DGN+G+YPIA+AVVEAETKDSWTWF+  L DD+G+   +G+TF+S+QQKGL   FD++ 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        P V+HRFCV
Subjt:  PNVNHRFCV

XP_030922963.1 uncharacterized protein LOC115949829 [Quercus lobata]1.3e-3561.47Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+C  ACK  FL  C PFIG+D CHLKG   G +  AVG DGN+G+YPIA+AVVEAETKDSWTWF+  L DD+G+   +G+TF+SDQQKGL   FD++ 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        P V+HRFCV
Subjt:  PNVNHRFCV

TrEMBL top hitse value%identityAlignment
A0A2N9INE0 CCHC-type domain-containing protein1.1e-3261.11Show/hide
Query:  YICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVFP
        YIC  ACK  FL GC PFIGLD CHLKG   G L  A+G D N+G+YPIA+AV EAE K+SW WFL +L  D+G+   + +TF+SDQQKGLVPTF+ + P
Subjt:  YICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVFP

Query:  NVNHRFCV
         V+HRFCV
Subjt:  NVNHRFCV

A0A444XKU6 SWIM-type domain-containing protein1.4e-3255.56Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+CF ACK+ F+GGC PFIGLD   ++G   G L  A+G D N+ IYPIA+AVVE+E KDSW WFL +L++D+G+F + GF F+SD QKGL+P   +++
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFC
         N NHRFC
Subjt:  PNVNHRFC

A0A5E4G990 PREDICTED: transposon2.9e-3361.47Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+C  ACK+ F+ GC P IG+DACHLKG  QG L  AVGID ND IYPIA+AV E E+KDSW WFL LL +DLG     G+TFISDQQKGL   F+ V 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        P  +HR+CV
Subjt:  PNVNHRFCV

A0A6J5WXP5 SWIM-type domain-containing protein2.9e-3359.63Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+C  ACK+ FL GC P IG+D CHLKGP  G L  AVG+D ND +YPIA+A VE ETK++W+WFL LL DDLG     G+ FISDQQKGL   FD V 
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFCV
        P   HR+CV
Subjt:  PNVNHRFCV

A0A6P4E273 uncharacterized protein LOC1074959221.1e-3256.48Show/hide
Query:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF
        +Y+CF ACK+ F+GGC PFIGLD   L+G   G L  A+G D N+ IYPIA+A+VE+E K SW WFL +LQDD+G+F   G  F+SD QKGL+P   +++
Subjt:  MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVF

Query:  PNVNHRFC
        PN NHRFC
Subjt:  PNVNHRFC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G64255.1 MuDR family transposase5.6e-0527.71Show/hide
Query:  CSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDD
        C P I +D  +L    Q  L  A G+D  +  +P+A+AV +  + D W WFL+ +++ +     KG   IS     ++   ++
Subjt:  CSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDD

AT1G64260.1 MuDR family transposase4.6e-0728.28Show/hide
Query:  CSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDD-----VFPNVNHRFCV
        C P I +D   L G  Q  L  A G+D  +  +P+A+AV +  + DSW WF + +++ +     K    IS   + +V   ++       P  +H+FC+
Subjt:  CSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDD-----VFPNVNHRFCV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATATGCTTTAGAGCATGTAAAGAGAGGTTTCTTGGTGGATGTAGTCCATTCATAGGACTGGATGCATGCCACCTCAAGGGGCCATGCCAAGGACATCTGACGGC
GGCAGTTGGAATAGATGGTAATGATGGCATATACCCTATTGCATGGGCTGTGGTGGAGGCAGAGACCAAAGATAGTTGGACATGGTTTCTTTCCCTTCTTCAAGATGATC
TAGGCAACTTTCACTCTAAGGGATTTACTTTCATATCAGATCAGCAAAAGGGTCTTGTTCCGACTTTCGATGACGTGTTCCCAAATGTCAACCATAGGTTCTGTGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATATATGCTTTAGAGCATGTAAAGAGAGGTTTCTTGGTGGATGTAGTCCATTCATAGGACTGGATGCATGCCACCTCAAGGGGCCATGCCAAGGACATCTGACGGC
GGCAGTTGGAATAGATGGTAATGATGGCATATACCCTATTGCATGGGCTGTGGTGGAGGCAGAGACCAAAGATAGTTGGACATGGTTTCTTTCCCTTCTTCAAGATGATC
TAGGCAACTTTCACTCTAAGGGATTTACTTTCATATCAGATCAGCAAAAGGGTCTTGTTCCGACTTTCGATGACGTGTTCCCAAATGTCAACCATAGGTTCTGTGTGTGA
Protein sequenceShow/hide protein sequence
MYICFRACKERFLGGCSPFIGLDACHLKGPCQGHLTAAVGIDGNDGIYPIAWAVVEAETKDSWTWFLSLLQDDLGNFHSKGFTFISDQQKGLVPTFDDVFPNVNHRFCV