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Lag0018571 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018571
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr5:29783453..29784296
RNA-Seq ExpressionLag0018571
SyntenyLag0018571
Gene Ontology termsGO:0044237 - cellular metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067607.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.9e-1935.79Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR---------------------------------RMDPSKTLEENLDDFNVVCTELINT
        KVAK +LD  KLP  IT+ EK +M E+ +S+I+L+L+D VLR                                 +MD SK+LEENLD+F  +  +L N 
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR---------------------------------RMDPSKTLEENLDDFNVVCTELINT

Query:  DETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRGNRGQHDNSC
         E +  +NQAVILLNSL E Y+EV+  +KYGR+ L++  ++D+L+ ++LE+K E+K+ E L  + ++  +  +G     R         C
Subjt:  DETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRGNRGQHDNSC

PON64464.1 hypothetical protein TorRG33x02_273130 [Trema orientale]6.4e-2040.31Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-------------------------------------RMDPSKTLEENLDDFNVVCTE
        K AK L D S LP  +   EK+E+ E A+S +IL+LADNVLR                                     +MD +K+LE+NLDDF  +   
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-------------------------------------RMDPSKTLEENLDDFNVVCTE

Query:  LINTDETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKES-EALFVK---DKNRPQRGRGGS---SRGR
        L N DE I+ +NQA+I+LNSL E+YK+++ T+KYGR  LSLD ++ +LR  DLE+K EK+ + E L V+    K    +GRG S   S+GR
Subjt:  LINTDETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKES-EALFVK---DKNRPQRGRGGS---SRGR

TXG49068.1 hypothetical protein EZV62_024943 [Acer yangbiense]2.9e-2040.36Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR----RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEAYKEVRPT
        K+ KA+    KLP  + + +K++M E+A  +IIL+L+DNVL+    +MD SK L +NLD+F  +  EL NT   E +  +N+A+ILLN+L E++K+V+  
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR----RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEAYKEVRPT

Query:  MKYGRNKLSLDQIVDSLRLKDLEMKSEKKE-SEALFVKDKNRPQRGRGGS-----SRGRGNRGQHD
        +KYGR  LSL++ + +L+ K+LE+K EKK+ SE LFV+ +   + G   +      +GR    QH+
Subjt:  MKYGRNKLSLDQIVDSLRLKDLEMKSEKKE-SEALFVKDKNRPQRGRGGS-----SRGRGNRGQHD

TXG66196.1 hypothetical protein EZV62_007471 [Acer yangbiense]1.7e-2042.36Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-----------RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEA
        K+ +A+  P KLP ++T  +KD+M E+A  +IIL+L+DNVLR           +MDPSK L +NLD+F  + TEL N   +E +  +N+A+ILLNSL  +
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-----------RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEA

Query:  YKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVK
        +K+V+  +KYGR+ L L++ + +L+ KDLE+K E+K+   + V+
Subjt:  YKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVK

TXG70425.1 hypothetical protein EZV62_005360 [Acer yangbiense]3.7e-2041.06Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-RMDPSKTLEENLDDFNVVCTELINTD--ETIDSDNQAVILLNSLFEAYKEVRPTMKY
        K AK+L +   LP++++  EK ++ E A+++IIL+LADN+   +MD SK+LE+NLDDF  +  EL N D  E +  +NQAVI+LN L ++YK+++  +KY
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-RMDPSKTLEENLDDFNVVCTELINTD--ETIDSDNQAVILLNSLFEAYKEVRPTMKY

Query:  GRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRG
        GR+ LS++ ++ +LR +++EM+SEK+ S    +  + R ++ +G + +GRG
Subjt:  GRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRG

TrEMBL top hitse value%identityAlignment
A0A2P5CTT8 Uncharacterized protein3.1e-2040.31Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-------------------------------------RMDPSKTLEENLDDFNVVCTE
        K AK L D S LP  +   EK+E+ E A+S +IL+LADNVLR                                     +MD +K+LE+NLDDF  +   
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-------------------------------------RMDPSKTLEENLDDFNVVCTE

Query:  LINTDETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKES-EALFVK---DKNRPQRGRGGS---SRGR
        L N DE I+ +NQA+I+LNSL E+YK+++ T+KYGR  LSLD ++ +LR  DLE+K EK+ + E L V+    K    +GRG S   S+GR
Subjt:  LINTDETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKES-EALFVK---DKNRPQRGRGGS---SRGR

A0A5A7VKC2 Retrotransposon protein, putative, Ty1-copia subclass9.0e-2035.79Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR---------------------------------RMDPSKTLEENLDDFNVVCTELINT
        KVAK +LD  KLP  IT+ EK +M E+ +S+I+L+L+D VLR                                 +MD SK+LEENLD+F  +  +L N 
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR---------------------------------RMDPSKTLEENLDDFNVVCTELINT

Query:  DETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRGNRGQHDNSC
         E +  +NQAVILLNSL E Y+EV+  +KYGR+ L++  ++D+L+ ++LE+K E+K+ E L  + ++  +  +G     R         C
Subjt:  DETIDSDNQAVILLNSLFEAYKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRGNRGQHDNSC

A0A5C7GWG5 Integrase catalytic domain-containing protein1.4e-2040.36Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR----RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEAYKEVRPT
        K+ KA+    KLP  + + +K++M E+A  +IIL+L+DNVL+    +MD SK L +NLD+F  +  EL NT   E +  +N+A+ILLN+L E++K+V+  
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR----RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEAYKEVRPT

Query:  MKYGRNKLSLDQIVDSLRLKDLEMKSEKKE-SEALFVKDKNRPQRGRGGS-----SRGRGNRGQHD
        +KYGR  LSL++ + +L+ K+LE+K EKK+ SE LFV+ +   + G   +      +GR    QH+
Subjt:  MKYGRNKLSLDQIVDSLRLKDLEMKSEKKE-SEALFVKDKNRPQRGRGGS-----SRGRGNRGQHD

A0A5C7ICP3 Uncharacterized protein8.1e-2142.36Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-----------RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEA
        K+ +A+  P KLP ++T  +KD+M E+A  +IIL+L+DNVLR           +MDPSK L +NLD+F  + TEL N   +E +  +N+A+ILLNSL  +
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-----------RMDPSKTLEENLDDFNVVCTELINT--DETIDSDNQAVILLNSLFEA

Query:  YKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVK
        +K+V+  +KYGR+ L L++ + +L+ KDLE+K E+K+   + V+
Subjt:  YKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVK

A0A5C7IML8 gag_pre-integrs domain-containing protein1.8e-2041.06Show/hide
Query:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-RMDPSKTLEENLDDFNVVCTELINTD--ETIDSDNQAVILLNSLFEAYKEVRPTMKY
        K AK+L +   LP++++  EK ++ E A+++IIL+LADN+   +MD SK+LE+NLDDF  +  EL N D  E +  +NQAVI+LN L ++YK+++  +KY
Subjt:  KVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLR-RMDPSKTLEENLDDFNVVCTELINTD--ETIDSDNQAVILLNSLFEAYKEVRPTMKY

Query:  GRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRG
        GR+ LS++ ++ +LR +++EM+SEK+ S    +  + R ++ +G + +GRG
Subjt:  GRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGGTGGCGACTCCAAACCTCTTCCCTCGAAAGAGACCCTTAGGGAAGGACGTCGGCCGCTCTGCAAGGTTGCAAAGGCTCTTCTTGATCCAAGTAAGTTACCTAT
TGCTATCACCAAATATGAGAAAGATGAGATGTCTGAAATTGCGCATAGTTCCATTATATTGCATCTTGCGGATAATGTACTTCGTAGAATGGATCCATCCAAAACACTTG
AAGAAAATCTTGATGACTTCAACGTAGTTTGTACTGAATTGATCAATACCGATGAGACTATTGACTCAGATAACCAAGCGGTAATTCTTCTAAATTCGTTATTTGAGGCC
TATAAGGAAGTAAGACCAACTATGAAATATGGGAGAAACAAGTTGTCACTAGACCAAATAGTAGATTCCTTGAGACTAAAGGACCTTGAAATGAAATCCGAGAAGAAAGA
ATCTGAAGCTCTTTTTGTAAAGGACAAAAACAGACCCCAAAGAGGAAGAGGAGGATCAAGTAGAGGTCGTGGAAATCGGGGTCAACATGATAACAGCTGTCGTAACGTCA
TCGCGACGCGGAGCAACCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAGAAGAGGTTGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTGGTGGCGACTCCAAACCTCTTCCCTCGAAAGAGACCCTTAGGGAAGGACGTCGGCCGCTCTGCAAGGTTGCAAAGGCTCTTCTTGATCCAAGTAAGTTACCTAT
TGCTATCACCAAATATGAGAAAGATGAGATGTCTGAAATTGCGCATAGTTCCATTATATTGCATCTTGCGGATAATGTACTTCGTAGAATGGATCCATCCAAAACACTTG
AAGAAAATCTTGATGACTTCAACGTAGTTTGTACTGAATTGATCAATACCGATGAGACTATTGACTCAGATAACCAAGCGGTAATTCTTCTAAATTCGTTATTTGAGGCC
TATAAGGAAGTAAGACCAACTATGAAATATGGGAGAAACAAGTTGTCACTAGACCAAATAGTAGATTCCTTGAGACTAAAGGACCTTGAAATGAAATCCGAGAAGAAAGA
ATCTGAAGCTCTTTTTGTAAAGGACAAAAACAGACCCCAAAGAGGAAGAGGAGGATCAAGTAGAGGTCGTGGAAATCGGGGTCAACATGATAACAGCTGTCGTAACGTCA
TCGCGACGCGGAGCAACCGACGTCCTTCCCTAAGGGTCTCTTTCGAGAGAAGAGGTTGGTAG
Protein sequenceShow/hide protein sequence
MIGGDSKPLPSKETLREGRRPLCKVAKALLDPSKLPIAITKYEKDEMSEIAHSSIILHLADNVLRRMDPSKTLEENLDDFNVVCTELINTDETIDSDNQAVILLNSLFEA
YKEVRPTMKYGRNKLSLDQIVDSLRLKDLEMKSEKKESEALFVKDKNRPQRGRGGSSRGRGNRGQHDNSCRNVIATRSNRRPSLRVSFERRGW