; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0018598 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018598
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr5:30443194..30445090
RNA-Seq ExpressionLag0018598
SyntenyLag0018598
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-8348.94Show/hide
Query:  VDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPF
        +  IKPRTFEELATRAHDM+LSIA+R  +D L    R +     +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPF
Subjt:  VDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPF

Query:  PGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSK--------HQRKK
        P  D+ DMLEQL+E QLI+LP+CKR E++ KV+DP YCKYHRVI H VE+CFVLK+LI KLA+E KIELD+DEVAQ+N   +   S          QRK 
Subjt:  PGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSK--------HQRKK

Query:  -------DPKKLQPKRKRSTNFSQPQQ----------LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDHIKPPTTRP
               +P  ++ ++K  T+ SQ ++          +  L +SF +   ++  E  A  T+  ++V       EE+DNS + +QRTSVFD IKP TTR 
Subjt:  -------DPKKLQPKRKRSTNFSQPQQ----------LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDHIKPPTTRP

Query:  SVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLK
        SVFQR+SMA  +EENQC   T  + SAF+RLS+S SKK RPST  FDRLK+T+DQ +R+M  L+ K F E N+D K+ S +PSRMKR + V INTEGSL 
Subjt:  SVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLK

Query:  VKPNLIILTNPTSQGPDQDHDEDKS
        VKP  II TNP ++G ++  DE+KS
Subjt:  VKPNLIILTNPTSQGPDQDHDEDKS

KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0229.34Show/hide
Query:  KTSSMVSIEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLF------------EPDSDVVTVMMTETRTMEERMTEMQEHIN
        K +S  S    SY+G            ++++  ++  +             +++ NPLF            E   +VV+VMM +  T E  M EM+  IN
Subjt:  KTSSMVSIEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLF------------EPDSDVVTVMMTETRTMEERMTEMQEHIN

Query:  NLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGN--AFEWYTDLESESVDSIKPRTFEEL
         LMK +EE+D +I  LK Q++    +ESSQT VVK  DKG     E     +S SV S+  +  +++
Subjt:  NLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGN--AFEWYTDLESESVDSIKPRTFEEL

KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.1e-8943.22Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGNAFEWYTDLE E    IKPRTFEELATRAHDMELSIA+R  +D L    R +   
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K + +  +H        TL+ERQKK+YPFP  D+ DMLEQL+E QLI+LPKCKR E+  KV+DP YCKYHR
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKL +E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDN
                            KG    K K +R K   K +P + +  +F QP+Q + L + F ++F   H KE   +   +   +          EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+STSKK RPSTS FDRLK+ +DQ +R+M +L+VK F E N+D K+ S
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

KAA0055462.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-8441.94Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGN FEWYTDL+ E    IKPRTFEELATRAHDMELSIA+R  +D L    R     
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+Y FP  D+ DMLEQL++ QLI+L +CKR E+  KV+DP YCKYH 
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKLA+E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN
                            KG    K K +R K   K +P + +  +F QP++ + L +  S++F +   E +       T+  ++V       EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F E N+D K+ +
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

KAA0056121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.1e-8737.41Show/hide
Query:  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHD--
        K  I+  E   +   Y++ K      P  E  P  ++++VM+T   T E RM E+++ +N LMK +EE+D +I  LK+ IE+   AESS    VKN D  
Subjt:  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHD--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----KGNAFEWYTDLESESVDS----------------------------------------------------------------------------I
             KGNA +WY DLE ES+D+                                                                            I
Subjt:  -----KGNAFEWYTDLESESVDS----------------------------------------------------------------------------I

Query:  KPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEK-----RQTNG--THHLTLKERQKKIYPFPGDD
        KPRTFEELATRAHDMELSIA+R  +D L P  R +    ++T       I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFP  D
Subjt:  KPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEK-----RQTNG--THHLTLKERQKKIYPFPGDD

Query:  IPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSKHQRKKDPKKLQPKRK--
        + DMLEQLLE QLI+LP+CKR E+  KV+DP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DEVAQ+N A ++  S   + KD   LQ +R   
Subjt:  IPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSKHQRKKDPKKLQPKRK--

Query:  ------RSTNFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQR
              RS     P++++ +    + +  + +  N  +S     +EV+NS +  QRTSVFD IKP TTR SVFQR+S+A  EEENQC     TR S  +R
Subjt:  ------RSTNFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQR

Query:  LSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
        LS+ST KK RPSTS FDRLK+T+DQ +R+M + + K F E N+D K+ S +PSRMKR +FV INTEGSL VKP  II TNPT++G +Q   E+KS
Subjt:  LSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-8441.94Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGN FEWYTDL+ E    IKPRTFEELATRAHDMELSIA+R  +D L    R     
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+Y FP  D+ DMLEQL++ QLI+L +CKR E+  KV+DP YCKYH 
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKLA+E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN
                            KG    K K +R K   K +P + +  +F QP++ + L +  S++F +   E +       T+  ++V       EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F E N+D K+ +
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein1.7e-8348.94Show/hide
Query:  VDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPF
        +  IKPRTFEELATRAHDM+LSIA+R  +D L    R +     +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+YPF
Subjt:  VDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPF

Query:  PGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSK--------HQRKK
        P  D+ DMLEQL+E QLI+LP+CKR E++ KV+DP YCKYHRVI H VE+CFVLK+LI KLA+E KIELD+DEVAQ+N   +   S          QRK 
Subjt:  PGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSK--------HQRKK

Query:  -------DPKKLQPKRKRSTNFSQPQQ----------LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDHIKPPTTRP
               +P  ++ ++K  T+ SQ ++          +  L +SF +   ++  E  A  T+  ++V       EE+DNS + +QRTSVFD IKP TTR 
Subjt:  -------DPKKLQPKRKRSTNFSQPQQ----------LVMLNKSFSKTFHKKEKENLA--TSYCIDV-------EEVDNSKKSEQRTSVFDHIKPPTTRP

Query:  SVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLK
        SVFQR+SMA  +EENQC   T  + SAF+RLS+S SKK RPST  FDRLK+T+DQ +R+M  L+ K F E N+D K+ S +PSRMKR + V INTEGSL 
Subjt:  SVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLK

Query:  VKPNLIILTNPTSQGPDQDHDEDKS
        VKP  II TNP ++G ++  DE+KS
Subjt:  VKPNLIILTNPTSQGPDQDHDEDKS

A0A5A7SRE2 Ty3-gypsy retrotransposon protein5.2e-0329.34Show/hide
Query:  KTSSMVSIEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLF------------EPDSDVVTVMMTETRTMEERMTEMQEHIN
        K +S  S    SY+G            ++++  ++  +             +++ NPLF            E   +VV+VMM +  T E  M EM+  IN
Subjt:  KTSSMVSIEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLF------------EPDSDVVTVMMTETRTMEERMTEMQEHIN

Query:  NLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGN--AFEWYTDLESESVDSIKPRTFEEL
         LMK +EE+D +I  LK Q++    +ESSQT VVK  DKG     E     +S SV S+  +  +++
Subjt:  NLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGN--AFEWYTDLESESVDSIKPRTFEEL

A0A5A7TGM1 Retrotransposon gag protein5.6e-9043.22Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGNAFEWYTDLE E    IKPRTFEELATRAHDMELSIA+R  +D L    R +   
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K + +  +H        TL+ERQKK+YPFP  D+ DMLEQL+E QLI+LPKCKR E+  KV+DP YCKYHR
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKL +E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDN
                            KG    K K +R K   K +P + +  +F QP+Q + L + F ++F   H KE   +   +   +          EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTF---HKKEKENLATSYCIDV----------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+S+   EEENQC  ST TR SAF+ LS+STSKK RPSTS FDRLK+ +DQ +R+M +L+VK F E N+D K+ S
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

A0A5A7UI09 Retrotransposon gag protein1.2e-8441.94Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGN FEWYTDL+ E    IKPRTFEELATRAHDMELSIA+R  +D L    R     
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+Y FP  D+ DMLEQL++ QLI+L +CKR E+  KV+DP YCKYH 
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKLA+E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN
                            KG    K K +R K   K +P + +  +F QP++ + L +  S++F +   E +       T+  ++V       EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F E N+D K+ +
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

A0A5A7URH1 Ty3-gypsy retrotransposon protein4.4e-8737.41Show/hide
Query:  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHD--
        K  I+  E   +   Y++ K      P  E  P  ++++VM+T   T E RM E+++ +N LMK +EE+D +I  LK+ IE+   AESS    VKN D  
Subjt:  KASIIASEETTLQGAYTNDKFLVKYNPLFE--PDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHD--

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----KGNAFEWYTDLESESVDS----------------------------------------------------------------------------I
             KGNA +WY DLE ES+D+                                                                            I
Subjt:  -----KGNAFEWYTDLESESVDS----------------------------------------------------------------------------I

Query:  KPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEK-----RQTNG--THHLTLKERQKKIYPFPGDD
        KPRTFEELATRAHDMELSIA+R  +D L P  R +    ++T       I+ESMVV+ T  KS SK K     R+ +G      TLKERQ+K+YPFP  D
Subjt:  KPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEET-------IEESMVVNTTLPKSSSKEK-----RQTNG--THHLTLKERQKKIYPFPGDD

Query:  IPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSKHQRKKDPKKLQPKRK--
        + DMLEQLLE QLI+LP+CKR E+  KV+DP YCKYHRVI HPVE+CFVLK+LILKLA+E KIELD+DEVAQ+N A ++  S   + KD   LQ +R   
Subjt:  IPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSKHQRKKDPKKLQPKRK--

Query:  ------RSTNFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQR
              RS     P++++ +    + +  + +  N  +S     +EV+NS +  QRTSVFD IKP TTR SVFQR+S+A  EEENQC     TR S  +R
Subjt:  ------RSTNFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQR

Query:  LSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
        LS+ST KK RPSTS FDRLK+T+DQ +R+M + + K F E N+D K+ S +PSRMKR +FV INTEGSL VKP  II TNPT++G +Q   E+KS
Subjt:  LSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

A0A5D3CCI8 Retrotransposon gag protein1.2e-8441.94Show/hide
Query:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS
        ++HI + ++  E   S+ +QL  Q                   KGN FEWYTDL+ E    IKPRTFEELATRAHDMELSIA+R  +D L    R     
Subjt:  QEHINNLMKAIEEKDSQIEQLKSQIENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRS

Query:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR
          +T       + ESM+V  T  KS SK K   +  +H        TL+ERQKK+Y FP  D+ DMLEQL++ QLI+L +CKR E+  KV+DP YCKYH 
Subjt:  DEET-------IEESMVVNTTLPKSSSKEKRQTNGTHH-------LTLKERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHR

Query:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------
        VI H VE+CFVLK+LILKLA+E KIELD+DEVAQ+N   +                                                            
Subjt:  VIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATM------------------------------------------------------------

Query:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN
                            KG    K K +R K   K +P + +  +F QP++ + L +  S++F +   E +       T+  ++V       EEVDN
Subjt:  --------------------KG----KSKHQRKKDPKKLQPKRKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLA------TSYCIDV-------EEVDN

Query:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS
        S + +QRTSVFD IKP TTR SVFQR+SMA  EE+NQC  ST  R SAF+RLS+STSKK RPSTS FDRLK+T+DQ +R+M +L+ K F E N+D K+ +
Subjt:  SKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQS

Query:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS
         +PSRMKR + V INTEGSL VKP  II TNP ++G ++  DE+KS
Subjt:  SIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCATTCAAGACTTCTTCGATGGTCTCTATCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTAT
CATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTGAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAA
ATTGAGAACGAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAATGCTTTTGAATGGTACACTGATCTAGAATCGGAGTCAGTAGACAG
TATAAAGCCTCGCACCTTTGAGGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTCTTCCCTGACATGAGAAAAGAAG
GAAGGAGCGACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACGAATGGAACGCATCACTTAACTTTA
AAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGGTGACGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACTAGA
AGAGATGAAGAAAGTCAATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGCCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGG
AAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCCCAATCAAATCTTGCTACAATGAAAGGAAAGAGCAAACATCAAAGAAAAAAGGATCCTAAGAAACTTCAACCCAAG
AGGAAGAGAAGTACAAATTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTG
CATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCATATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTA
TGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGACCTTCAACATCT
GTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTAAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCAT
CCCGTCACGTATGAAGAGGAATATCTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACCTGATC
AAGACCATGATGAAGATAAGAGTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCATTCAAGACTTCTTCGATGGTCTCTATCGAGATCAAGTCTTACATGGGTTCAACTGCCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAGCTTCTAT
CATTGCAAGCGAAGAAACAACCTTGCAGGGGGCATATACCAATGACAAGTTTCTTGTGAAGTATAACCCTCTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGA
CTGAGACAAGGACTATGGAAGAAAGAATGACTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAA
ATTGAGAACGAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACGACAAAGGAAATGCTTTTGAATGGTACACTGATCTAGAATCGGAGTCAGTAGACAG
TATAAAGCCTCGCACCTTTGAGGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTCTTCCCTGACATGAGAAAAGAAG
GAAGGAGCGACGAAGAGACTATAGAAGAATCTATGGTTGTCAACACAACCCTTCCCAAGTCGTCTTCGAAAGAAAAGCGACAAACGAATGGAACGCATCACTTAACTTTA
AAGGAAAGACAAAAGAAAATCTATCCTTTCCCTGGTGACGACATCCCTGATATGTTGGAACAACTACTGGAAGCGCAACTGATAGAGCTTCCTAAGTGTAAACGACTAGA
AGAGATGAAGAAAGTCAATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGCCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTTTAAAGCTGGCTAAGG
AAGGCAAAATTGAGCTCGACCTTGATGAAGTAGCCCAATCAAATCTTGCTACAATGAAAGGAAAGAGCAAACATCAAAGAAAAAAGGATCCTAAGAAACTTCAACCCAAG
AGGAAGAGAAGTACAAATTTTTCTCAACCTCAACAACTGGTGATGTTGAATAAATCCTTCTCCAAAACTTTCCACAAAAAGGAAAAAGAGAACCTTGCAACTTCCTACTG
CATCGACGTAGAAGAAGTTGACAATTCTAAGAAGAGTGAACAAAGGACTTCCGTCTTCGATCATATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAAAGAATGAGTA
TGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGACCTTCAACATCT
GTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTAAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCAT
CCCGTCACGTATGAAGAGGAATATCTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACCTGATC
AAGACCATGATGAAGATAAGAGTTTTTAA
Protein sequenceShow/hide protein sequence
MSFKTSSMVSIEIKSYMGSTAHCCFNELRLQEDKASIIASEETTLQGAYTNDKFLVKYNPLFEPDSDVVTVMMTETRTMEERMTEMQEHINNLMKAIEEKDSQIEQLKSQ
IENEHIAESSQTQVVKNHDKGNAFEWYTDLESESVDSIKPRTFEELATRAHDMELSIASRENQDLLFPDMRKEGRSDEETIEESMVVNTTLPKSSSKEKRQTNGTHHLTL
KERQKKIYPFPGDDIPDMLEQLLEAQLIELPKCKRLEEMKKVNDPKYCKYHRVIGHPVERCFVLKDLILKLAKEGKIELDLDEVAQSNLATMKGKSKHQRKKDPKKLQPK
RKRSTNFSQPQQLVMLNKSFSKTFHKKEKENLATSYCIDVEEVDNSKKSEQRTSVFDHIKPPTTRPSVFQRMSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRPSTS
VFDRLKVTSDQPKRKMDNLEVKLFDEVNNDKKLQSSIPSRMKRNIFVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEDKSF