CuGenDBv2

Gene ID	Lag0018599
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Genome location	chr5:30450391..30452250
RNA-Seq Expression	Lag0018599
Synteny	Lag0018599
Gene Ontology terms	NA
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAF8393253.1 hypothetical protein HHK36_021494 [Tetracentron sinense]

9.9e-55

37.11

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Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLA--NSSNSSASKRFQKSPWSSLIASSFSW
        L  IGE +S +D ++ +L GLG +YN  VTSI    D+ S+    S+LL +E RL +Q+S D  S + AN+A  N +   A  +  +    SL  SS   
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLA--NSSNSSASKRFQKSPWSSLIASSFSW

Query:  PSQN---------------------SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWF
         +QN                     +NRPQCQ+ GK GHT   CY++ ++ +QA   ++ +Q   NQ  Q S    T  +   DS             WF
Subjt:  PSQN---------------------SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWF

Query:  MDSRATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKT
        +DS ATHH+T    N+ +  PY G +Q+ VGNGK + +S +GS  + SN+  F L+  F  + P+LS+NLI++A+ C DN++ +EFHP  F VKDR +K 
Subjt:  MDSRATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKT

Query:  IMLQGLLKDGLYKLSLPPNRSPQSPQSQ-----SV-ALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH
        ++ QG L++GLYK  +    + QS  S      SV A  S +  + LWH R+GH S +IV R+L DC++   ++T+  C  CQ AKSH
Subjt:  IMLQGLLKDGLYKLSLPPNRSPQSPQSQ-----SV-ALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH

KAF8399498.1 hypothetical protein HHK36_015364 [Tetracentron sinense]

5.8e-55

36.6

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Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSP--WSSLIASSFSW
        L  IGE +S +D ++ +L GLG +YN  VTSI    D+ S+    S+LL +E RL +Q+S D  S + AN+A + ++     ++ +     SL  SS   
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSP--WSSLIASSFSW

Query:  PSQN---------------------SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWF
         +QN                     +NRPQCQ+ GK GHT   CY++ ++ +QA   ++ +Q   NQ  Q S    T  +   DS             WF
Subjt:  PSQN---------------------SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWF

Query:  MDSRATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKT
        +DS ATHH+T    N+ +  PY G +Q+ VGNGK + +S +GS  + SN+  F L+  F  + P+LS+NLI++A+ C DN++ +EFHP  F VKDR +K 
Subjt:  MDSRATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKT

Query:  IMLQGLLKDGLYKLSLPPNRSPQSPQSQ-----SV-ALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH
        ++ QG L++GLYK  +    + QS  S      SV A  S +  + LWH R+GH S +IV R+L DC++   ++T+  C  CQ AKSH
Subjt:  IMLQGLLKDGLYKLSLPPNRSPQSPQSQ-----SV-ALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH

RVW18104.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

5.5e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGES+S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  N+        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

RVW69807.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

2.4e-61

42.39

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Query:  TIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSPWSSLIASSFSWPSQN
        TIGE LSY+D L  ILEGL  EY+ FVTSI N +DRPSL +  SLL  YE RL ++S   +L+  QAN                            P  N
Subjt:  TIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSPWSSLIASSFSWPSQN

Query:  SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFN-QFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHMTPDLNNIEHPLPYFG
        ++ PQCQI GK GH  L  Y++ NL Y   P    + A FN   P  +  P ++  T+S +   L + S  N  W+MDS ATHH TP+  ++   + Y  
Subjt:  SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFN-QFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHMTPDLNNIEHPLPYFG

Query:  CEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKDGLYKLSLPPNRSPQS
         +  +VGN K I +SHIG + + S  SV P+ L  VLHTP +S  LI++ RL  DN AFVEF+P  FLVKD+ +K ++LQG L+ GLYKL+ P   +  S
Subjt:  CEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKDGLYKLSLPPNRSPQS

Query:  ----------PQSQSVALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH
                  P   + A LS    V LWH RLGHP+ ++V +VL  C++KFS+S E  C  CQLAKSH
Subjt:  ----------PQSQSVALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH

RVX04841.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]

5.5e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGES+S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  N+        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

TrEMBL top hits

e value

%identity

Alignment

A0A438C4C7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.6e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGES+S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  N+        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

A0A438DUW9 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.5e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGE +S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  NR        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

A0A438GC62 Retrovirus-related Pol polyprotein from transposon RE1

1.2e-61

42.39

Show/hide

Query:  TIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSPWSSLIASSFSWPSQN
        TIGE LSY+D L  ILEGL  EY+ FVTSI N +DRPSL +  SLL  YE RL ++S   +L+  QAN                            P  N
Subjt:  TIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKRFQKSPWSSLIASSFSWPSQN

Query:  SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFN-QFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHMTPDLNNIEHPLPYFG
        ++ PQCQI GK GH  L  Y++ NL Y   P    + A FN   P  +  P ++  T+S +   L + S  N  W+MDS ATHH TP+  ++   + Y  
Subjt:  SNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFN-QFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHMTPDLNNIEHPLPYFG

Query:  CEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKDGLYKLSLPPNRSPQS
         +  +VGN K I +SHIG + + S  SV P+ L  VLHTP +S  LI++ RL  DN AFVEF+P  FLVKD+ +K ++LQG L+ GLYKL+ P   +  S
Subjt:  CEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKDGLYKLSLPPNRSPQS

Query:  ----------PQSQSVALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH
                  P   + A LS    V LWH RLGHP+ ++V +VL  C++KFS+S E  C  CQLAKSH
Subjt:  ----------PQSQSVALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSH

A0A438IMW0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.5e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGE +S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  NR        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

A0A438J7B7 Retrovirus-related Pol polyprotein from transposon RE1

2.6e-53

33.42

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ
        L  IGES+S +D ++ +L GLG++YN  VT+I    D+ SL    S+LL +E RL++Q S++ L  + AN A+SSN+    R                F+
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLANSSNSSASKR----------------FQ

Query:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR
                  S    S +S RPQCQ+ GK GHT  VCY++ ++ +Q+T  +++  +                 + + ++MP   AS  N   + W++DS 
Subjt:  KSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN---ELWFMDSR

Query:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ
        A+HH+T ++ N+ +  PY G +++ +GNGK + +S+ G + + SN   F L+  F  H P +S NLI++A+ C DN+A +EFH   F VKD  +K ++ Q
Subjt:  ATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQ

Query:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH
        G L++GLYK  +  N+        + S    ST+ +   LWH RLGH +  IV R++ +C++         C  CQLAKSH    ++  ++  FH
Subjt:  GLLKDGLYKLSLPPNRSPQ--SPQSQSVALLSTLQDV-SLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFH

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.0e-33

28.01

Show/hide

Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLA--------NSSNSSASKRF-------QK
        L  +G+ + + + +  +LE L  EY P +  I      P+L +    LL +E+++   SS   + +    ++        N++N + + R+         
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSLVQANLA--------NSSNSSASKRF-------QK

Query:  SPWSSLIASSFSWPSQNSNRP---QCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRA
         PW    +S+   P+ N ++P   +CQI G  GH+   C    + L                  Q  P P T +   ++  +  P +S+    W +DS A
Subjt:  SPWSSLIASSFSWPSQNSNRP---QCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRA

Query:  THHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQG
        THH+T D NN+    PY G + ++V +G +I +SH GS+++ + +   PL L+ +L+ P++  NLI++ RLC+ N   VEF P  F VKD  +   +LQG
Subjt:  THHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQG

Query:  LLKDGLYKLSLPPNRSPQSPQSQSVALL---STLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQF--CFHCQLAKSH
          KD LY+  +          SQ V+L    S+    S WH RLGHP+  I+  V+++  +   + + +F  C  C + KS+
Subjt:  LLKDGLYKLSLPPNRSPQSPQSQSVALL---STLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQF--CFHCQLAKSH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

4.7e-31

27.51

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Query:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSL---VQANLANSSNSSASKRFQKSPWSSLIASSFS
        L  +G+ + + + +  +LE L  +Y P +  I      PSL +    L+  E++L   +S + + +   V  +   ++N + + R     +++    S S
Subjt:  LFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDSLSL---VQANLANSSNSSASKRFQKSPWSSLIASSFS

Query:  W-PSQNSNRP----------QCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHM
        W PS + +R           +CQI    GH+   C   H   +Q+T     S + F  +     QP+ + A +S          +    W +DS ATHH+
Subjt:  W-PSQNSNRP----------QCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLNELWFMDSRATHHM

Query:  TPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKD
        T D NN+    PY G + +++ +G +I ++H GS+++ +++    L L  VL+ P++  NLI++ RLC+ N   VEF P  F VKD  +   +LQG  KD
Subjt:  TPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGLLKD

Query:  GLYKLSLPPNRSPQSPQSQSVALLS---TLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQF--CFHCQLAKSH
         LY+  +          SQ+V++ +   +    S WH RLGHPS  I+  V+++  +   + + +   C  C + KSH
Subjt:  GLYKLSLPPNRSPQSPQSQSVALLS---TLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQF--CFHCQLAKSH

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGACACTTGTTGTTCCTCATCATCTCCCTCAGACTACCCCTACTCGACCATTGAACCCTAATATCGCTCCTTTTCAATCACATTTGCCCAACCCTCGAATTTCCCCTCC
TTTCCAAATACCTCCGGTTATGTCCCTGCTGCTTTTCACAATTGGAGAGTCGTTGTCTTATAAGGATCACTTGGTTTACATCTTGGAAGGCCTTGGAACCGAGTACAATC
CTTTTGTTACCTCAATCAAAAACCATACTGATCGTCCCTCTCTTGCCGATTTTTGCAGTCTTCTTTTGGTGTATGAAGCACGGCTGAAGAAGCAATCTTCTGTCGACTCC
CTCAGTCTCGTCCAAGCAAACTTAGCCAACTCTTCTAATTCCTCTGCTTCTAAACGCTTTCAGAAAAGTCCTTGGTCGTCCCTAATCGCCTCTTCCTTCTCTTGGCCATC
TCAAAATTCTAACCGCCCTCAATGTCAGATTTATGGAAAGCTAGGTCATACAACATTAGTATGCTACAACAAGCACAACCTGCTGTATCAGGCTACTCCTAAATCATCTT
CCTCCCAAGCCTTGTTTAATCAATTCCCTCAATCCTCACCTCAACCTCAAACCTCCTTTGCTACGTCCTCTGACTCTACCATGCCCTTACCTACTGCCTCTCATCTAAAC
GAGCTTTGGTTTATGGATTCAAGGGCAACACATCATATGACCCCTGACTTGAACAATATTGAGCATCCTCTTCCTTATTTTGGTTGCGAGCAGATGGTTGTTGGTAATGG
TAAGTCTATTTTGGTTTCTCACATTGGTTCTTCTGCTATTAAGTCTAATGCCTCTGTTTTTCCTTTGCGATTGTATTTTGTTTTGCATACTCCTCACTTGTCACATAATC
TCATTAACATTGCTCGTTTATGTCATGACAATAGTGCTTTTGTTGAGTTTCATCCGTGTCATTTTCTTGTGAAGGATCGTCTATCCAAGACCATTATGCTCCAGGGTCTT
CTTAAGGATGGGTTATACAAGTTGTCTCTTCCTCCCAACCGGTCTCCTCAATCTCCTCAAAGTCAGTCTGTTGCTCTCCTTTCAACCCTTCAAGATGTCTCGCTATGGCA
CCGTCGTCTTGGTCATCCCTCCTTTCAAATAGTTAAACGAGTCCTTACTGATTGTGACATCAAGTTCAGCTCATCAACTGAACAATTTTGTTTTCATTGTCAATTAGCTA
AGAGTCACTGTTGCAATTCTAAAGTGGTTAAAAATATAGATAGATTTCACTTCAAAATACTGTGCAAGTATACACAATCTAATAGTAAGTGA

mRNA sequence

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Protein sequence

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MTLVVPHHLPQTTPTRPLNPNIAPFQSHLPNPRISPPFQIPPVMSLLLFTIGESLSYKDHLVYILEGLGTEYNPFVTSIKNHTDRPSLADFCSLLLVYEARLKKQSSVDS
LSLVQANLANSSNSSASKRFQKSPWSSLIASSFSWPSQNSNRPQCQIYGKLGHTTLVCYNKHNLLYQATPKSSSSQALFNQFPQSSPQPQTSFATSSDSTMPLPTASHLN
ELWFMDSRATHHMTPDLNNIEHPLPYFGCEQMVVGNGKSILVSHIGSSAIKSNASVFPLRLYFVLHTPHLSHNLINIARLCHDNSAFVEFHPCHFLVKDRLSKTIMLQGL
LKDGLYKLSLPPNRSPQSPQSQSVALLSTLQDVSLWHRRLGHPSFQIVKRVLTDCDIKFSSSTEQFCFHCQLAKSHCCNSKVVKNIDRFHFKILCKYTQSNSK

Lag0018599 (gene) of Sponge gourd (AG-4) v1 genome