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Lag0018604 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0018604
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr5:30516727..30518360
RNA-Seq ExpressionLag0018604
SyntenyLag0018604
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF4351405.1 hypothetical protein F8388_001025, partial [Cannabis sativa]1.8e-3744.92Show/hide
Query:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM
        EGI  +++      V C G SGGL+LLW+++  V++ S+S GHID  VK     +WRF+GFYGNP    R +SW L+ RL GL   ++PWI GGDF EI+
Subjt:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM

Query:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          +EK+GG  RS S +S F +A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + +   ++K+    F  SDH+PI A
Subjt:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

KAF4372682.1 hypothetical protein F8388_000849, partial [Cannabis sativa]3.0e-3744.39Show/hide
Query:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM
        EGI  +++      V C G SGGL+LLW+++  V++ S+S GHID  VK     +WRF+GFYGNP    R  SW L+ RL GL   ++PWI GGDF E++
Subjt:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM

Query:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          +EK+GG  RS S +S F +A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + +   ++K+    F  SDH+PI A
Subjt:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

KAF4381998.1 hypothetical protein G4B88_006630 [Cannabis sativa]1.5e-3647.62Show/hide
Query:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF
        +SGGL+LLW+++  V++ S++ GHID  VK     LWRF+GFYGNP    R ESW L+ RL  L   ++PWI GGDF EI+  +EK+GGS RS S M++F
Subjt:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF

Query:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + D    +K+    F +SDH+PI+A
Subjt:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

XP_023871998.1 uncharacterized protein LOC111984613 [Quercus suber]1.0e-3744.92Show/hide
Query:  SAKVAVPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKD--FLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGG
        S  + VP    SGGL+LLW +EL V++ SYS+ HID  V + D    WRF+GFYGNP   +REESW+L+KRL   S  ++PW+  GDF E+M + EKEGG
Subjt:  SAKVAVPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKD--FLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGG

Query:  SVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMAKKNRGKAR
          R   QM+ F EAI  C L D+GY G  FTW R       VRERLDR L++  +       +++  A  SSDH  ++ K +   +R
Subjt:  SVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMAKKNRGKAR

XP_023903659.1 uncharacterized protein LOC112015491 [Quercus suber]1.0e-3744.92Show/hide
Query:  SAKVAVPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKD--FLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGG
        S  + VP    SGGL+LLW +EL V++ SYS+ HID  V + D    WRF+GFYGNP   +REESW+L+KRL   S  ++PW+  GDF E+M + EKEGG
Subjt:  SAKVAVPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKD--FLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGG

Query:  SVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMAKKNRGKAR
          R   QM+ F EAI  C L D+GY G  FTW R       VRERLDR L++  +       +++  A  SSDH  ++ K +   +R
Subjt:  SVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMAKKNRGKAR

TrEMBL top hitse value%identityAlignment
A0A7J6DPD3 CCHC-type domain-containing protein7.2e-3747.62Show/hide
Query:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF
        +SGGL+LLW+++  V++ S++ GHID  VK     LWRF+GFYGNP    R ESW L+ RL  L   ++PWI GGDF EI+  +EK+GGS RS S M++F
Subjt:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF

Query:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + D    +K+    F +SDH+PI+A
Subjt:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

A0A7J6DZ24 CCHC-type domain-containing protein8.6e-3844.92Show/hide
Query:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM
        EGI  +++      V C G SGGL+LLW+++  V++ S+S GHID  VK     +WRF+GFYGNP    R +SW L+ RL GL   ++PWI GGDF EI+
Subjt:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM

Query:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          +EK+GG  RS S +S F +A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + +   ++K+    F  SDH+PI A
Subjt:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

A0A7J6FPV7 CCHC-type domain-containing protein1.5e-3744.39Show/hide
Query:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM
        EGI  +++      V C G SGGL+LLW+++  V++ S+S GHID  VK     +WRF+GFYGNP    R  SW L+ RL GL   ++PWI GGDF E++
Subjt:  EGISAKVA------VPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDF-LWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIM

Query:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          +EK+GG  RS S +S F +A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + +   ++K+    F  SDH+PI A
Subjt:  FNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

A0A7J6GGL8 CCHC-type domain-containing protein7.2e-3747.62Show/hide
Query:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF
        +SGGL+LLW+++  V++ S++ GHID  VK     LWRF+GFYGNP    R ESW L+ RL  L   ++PWI GGDF EI+  +EK+GGS RS S M++F
Subjt:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF

Query:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + D    +K+    F +SDH+PI+A
Subjt:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

A0A7J6GL46 CCHC-type domain-containing protein7.2e-3747.62Show/hide
Query:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF
        +SGGL+LLW+++  V++ S++ GHID  VK     LWRF+GFYGNP    R ESW L+ RL  L   ++PWI GGDF EI+  +EK+GGS RS S M++F
Subjt:  TSGGLMLLWHEELVVNINSYSKGHIDTNVK-EKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPWIIGGDFKEIMFNDEKEGGSVRSASQMSKF

Query:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA
          A++ C+L D+G+ G  FTW   R+  A V+ERLDR+  NQ + D    +K+    F +SDH+PI+A
Subjt:  VEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAATCAATGAGAAGCTTTACCTATTTGAGTCAGAATTTTCAAGTGTTTCATTCAACCTTGCATTTGTCGTGAACTTCGAAGGGATATCGGCGAAGGTTGCAGTCCC
CTGTGAAGGCACCAGTGGGGGGCTGATGTTATTGTGGCATGAGGAGTTGGTTGTCAACATTAACTCCTATTCTAAGGGGCACATTGACACCAATGTTAAGGAAAAAGATT
TTTTATGGAGATTTAGCGGTTTTTATGGTAACCCAGTGGTGGATAAGAGGGAGGAGTCTTGGCTTCTAATGAAAAGGCTTCATGGGCTTAGCCAAGGGAATATTCCTTGG
ATCATAGGTGGCGATTTTAAGGAAATTATGTTCAATGACGAGAAGGAGGGTGGGTCAGTCAGGAGTGCTTCTCAAATGAGCAAATTTGTGGAGGCAATTGAGTGCTGCAA
CCTTACAGATGTTGGGTATTCTGGGAACAAGTTCACATGGTTTAGGGGGCGGAAGAAACATGCGAGAGTTAGAGAAAGATTGGACAGGTTCCTCATCAACCAATCTTTTA
TGGACCATTTGGACAATCTCAAGATTTTCCGTAATGCTTTTCACAGCTCAGACCACAAGCCAATTATGGCCAAGAAAAACAGAGGAAAAGCTAGAATTCCCCAGAAATGC
GACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTAGAAAAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAATCAATGAGAAGCTTTACCTATTTGAGTCAGAATTTTCAAGTGTTTCATTCAACCTTGCATTTGTCGTGAACTTCGAAGGGATATCGGCGAAGGTTGCAGTCCC
CTGTGAAGGCACCAGTGGGGGGCTGATGTTATTGTGGCATGAGGAGTTGGTTGTCAACATTAACTCCTATTCTAAGGGGCACATTGACACCAATGTTAAGGAAAAAGATT
TTTTATGGAGATTTAGCGGTTTTTATGGTAACCCAGTGGTGGATAAGAGGGAGGAGTCTTGGCTTCTAATGAAAAGGCTTCATGGGCTTAGCCAAGGGAATATTCCTTGG
ATCATAGGTGGCGATTTTAAGGAAATTATGTTCAATGACGAGAAGGAGGGTGGGTCAGTCAGGAGTGCTTCTCAAATGAGCAAATTTGTGGAGGCAATTGAGTGCTGCAA
CCTTACAGATGTTGGGTATTCTGGGAACAAGTTCACATGGTTTAGGGGGCGGAAGAAACATGCGAGAGTTAGAGAAAGATTGGACAGGTTCCTCATCAACCAATCTTTTA
TGGACCATTTGGACAATCTCAAGATTTTCCGTAATGCTTTTCACAGCTCAGACCACAAGCCAATTATGGCCAAGAAAAACAGAGGAAAAGCTAGAATTCCCCAGAAATGC
GACCGCATTTCTGGGAAGGCAAAAATGAAATGCGACCGCATTTCTAGAAAAATTTGA
Protein sequenceShow/hide protein sequence
MKINEKLYLFESEFSSVSFNLAFVVNFEGISAKVAVPCEGTSGGLMLLWHEELVVNINSYSKGHIDTNVKEKDFLWRFSGFYGNPVVDKREESWLLMKRLHGLSQGNIPW
IIGGDFKEIMFNDEKEGGSVRSASQMSKFVEAIECCNLTDVGYSGNKFTWFRGRKKHARVRERLDRFLINQSFMDHLDNLKIFRNAFHSSDHKPIMAKKNRGKARIPQKC
DRISGKAKMKCDRISRKI